PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr004296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 203aa MW: 23166.6 Da PI: 4.5772 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 120.9 | 1.2e-37 | 8 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrF+Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e k+wyf+s+r+ +nr+t++gyWk+ g +++++s+ Pbr004296.1 8 LPPGFRFDPTDEELVVHFLQRKATLLPFHP-DVIPDLHLYPYDPWELNGKALSEGKQWYFYSRRA--------QNRVTSNGYWKTLGIEEPIFSSsss 96 79*************************999.99**************97777889*******985........589******************9776 PP NAM 96 .kgelvglkktLvfykgrapk.gektdWvmheyrl 128 ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl Pbr004296.1 97 nSTSKVGMKRYLTFYVGEAPNsGIKTNWIMHEYRL 131 66667**********997765289*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-46 | 4 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.793 | 8 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-24 | 9 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGDNQFKLPP GFRFDPTDEE LVVHFLQRKA TLLPFHPDVI PDLHLYPYDP WELNGKALSE 60 GKQWYFYSRR AQNRVTSNGY WKTLGIEEPI FSSSSSNSTS KVGMKRYLTF YVGEAPNSGI 120 KTNWIMHEYR LSSSASDCAS SSTTTRSSKR RGQPKTEYSG YVLCRVYERD EEEDDDDDGT 180 ELSCLDEVFL SLDDLDEISL PN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-38 | 4 | 170 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-38 | 4 | 170 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-38 | 4 | 170 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-38 | 4 | 170 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-38 | 4 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-38 | 4 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-38 | 4 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-38 | 4 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-38 | 4 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-38 | 4 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-38 | 4 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-38 | 4 | 170 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-38 | 4 | 170 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-38 | 4 | 170 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr004296.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009333614.1 | 1e-150 | PREDICTED: NAC domain-containing protein 104-like isoform X2 | ||||
Swissprot | Q8GWK6 | 6e-81 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | D9ZJ88 | 1e-118 | D9ZJ88_MALDO; NAC domain class transcription factor | ||||
STRING | XP_008391397.1 | 1e-117 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-74 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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