PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr004276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29632.3 Da PI: 9.2614 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+d+++q+G g+W++ ++ g+ R++k+c++rw +yl Pbr004276.1 14 KGAWSKEEDQRLIDYIRQHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 62 | 1.2e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w++y Pbr004276.1 67 RGNFTQEEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTY 111 89********************.*********.************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.213 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.4E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.99E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 29.075 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-19 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-18 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.39E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRAPCCEKA HTNKGAWSKE EDQRLIDYIR QHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TQEEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT YVKRNLISRG 120 LDPQTHRPLN QATTATSTAP ASRLDLRNRP PPSSVVFGHK PINNHSKIEL LKHPKMEQEC 180 YNYNIESEAN CSTATGSGTT TEEDQQQQQQ KYKCGDLNLD LSIGLEPFQS KPTRASSGNS 240 AESRLHQIIV PPNSNNNHLF F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-29 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 7e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr004276.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN544704 | 0.0 | JN544704.1 Malus x domestica MYB transcription factor 3 (MYB3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018507963.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q38851 | 1e-91 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A498JF17 | 1e-165 | A0A498JF17_MALDO; Uncharacterized protein | ||||
STRING | XP_008378762.1 | 1e-165 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 6e-86 | myb domain protein 6 |