PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr004256.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 24660.3 Da PI: 8.6253 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.7 | 7.5e-07 | 168 | 193 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR +i +++ +L+el+P+ + Pbr004256.2 168 SIAERVRRTKISDRIRKLQELVPNmD 193 689********************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.45E-6 | 165 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.43E-4 | 166 | 196 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.3E-6 | 167 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MQRAAGGSSG GEVSQGGGGL GRYSSAPATW LEALLEEDEE DPLKPTQCLT ELLAGNTPCT 60 TVDPASYDGA AGYLSRQKSS PADFNGGGGG SGAYFAGFGI PAHLDFVSSS SSLSPNSPSS 120 SANKRVREQQ QQHHFSSDTH VKMEEGGLED SVGCRVRAKR GCATHPRSIA ERVRRTKISD 180 RIRKLQELVP NMDKGSYVIK NLKHGRNFRS ISAGANAQLK NDQKVPEMPP TV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr004256.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009379414.1 | 1e-142 | PREDICTED: transcription factor bHLH80 isoform X2 | ||||
Swissprot | Q9C8P8 | 4e-48 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A498J9I8 | 1e-114 | A0A498J9I8_MALDO; Uncharacterized protein | ||||
STRING | XP_009379411.1 | 1e-128 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9132 | 30 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 2e-30 | bHLH family protein |