PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004256.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 233aa    MW: 24660.3 Da    PI: 8.6253
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004256.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.5e-07168193630
                  HHHHHHHHHHHHHHHHHHHCTSCC.C CS
          HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                  +++Er RR +i +++ +L+el+P+ +
  Pbr004256.2 168 SIAERVRRTKISDRIRKLQELVPNmD 193
                  689********************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-6165194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.43E-4166196No hitNo description
Gene3DG3DSA:4.10.280.107.3E-6167193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MQRAAGGSSG GEVSQGGGGL GRYSSAPATW LEALLEEDEE DPLKPTQCLT ELLAGNTPCT  60
TVDPASYDGA AGYLSRQKSS PADFNGGGGG SGAYFAGFGI PAHLDFVSSS SSLSPNSPSS  120
SANKRVREQQ QQHHFSSDTH VKMEEGGLED SVGCRVRAKR GCATHPRSIA ERVRRTKISD  180
RIRKLQELVP NMDKGSYVIK NLKHGRNFRS ISAGANAQLK NDQKVPEMPP TV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004256.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379414.11e-142PREDICTED: transcription factor bHLH80 isoform X2
SwissprotQ9C8P84e-48BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A498J9I81e-114A0A498J9I8_MALDO; Uncharacterized protein
STRINGXP_009379411.11e-128(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-30bHLH family protein