PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003650.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25510.9 Da    PI: 5.5081
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003650.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i+n + rqvtfskRr g++KKAeELSvLCda++a+iifsstgkl+ey+s
  Pbr003650.1  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADIALIIFSSTGKLFEYAS 59
                 68***********************************************86 PP
2K-box50.11.2e-179317320100
        K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +++ L kei    +++R++ Ge+++ L+l+eLqqLe+ Le++l ++ +kK+e ++++i +lq+   +l een++Lr++++e
  Pbr003650.1  93 NYTMLSKEIAAKSHQLRQMRGEEIQGLNLEELQQLEKSLETGLGRVIEKKSEKIMKEIGDLQRNGMQLMEENERLRQEVAE 173
                  567788888888899***************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.557161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.84E-40277No hitNo description
SuperFamilySSF554552.22E-31375IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.39187177IPR002487Transcription factor, K-box
PfamPF014861.8E-1692171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADIALIIFSS TGKLFEYASS  60
SMKEILERHN LHSKNLEKLE QPSLQLQLVE NSNYTMLSKE IAAKSHQLRQ MRGEEIQGLN  120
LEELQQLEKS LETGLGRVIE KKSEKIMKEI GDLQRNGMQL MEENERLRQE VAEKSDGRRL  180
VQVDSENMFT EEGQSSESVT NPCNSNNGPQ DYDSSDTSLK LGCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-22169169MEF2C
5f28_B6e-22169169MEF2C
5f28_C6e-22169169MEF2C
5f28_D6e-22169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0047280.0LC004728.1 Malus domestica MdJa1 mRNA for JOINTLESS like protein MdJOINTLESSa, complete cds.
GenBankLC0047290.0LC004729.1 Malus domestica MdJa2 mRNA for JOINTLESS like protein MdJOINTLESSa, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364259.11e-160PREDICTED: MADS-box protein JOINTLESS-like
RefseqXP_009364260.11e-160PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY61e-115JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A385JFJ41e-160A0A385JFJ4_PYRCO; Jointless
STRINGXP_009364259.11e-159(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]