PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003389.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 675aa    MW: 75207.4 Da    PI: 9.5074
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003389.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.2e-101869348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                      W t+E++ll++av+++G+ +W+++a ++         +t+  ck ++++++
      Pbr003389.1 18 TWGTWEELLLACAVHRFGTQSWDSVATELRkrssnlHLLTPHACKRKFHDLR 69
                     7*****************************9999997799999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00121571IPR001005SANT/Myb domain
CDDcd001676.93E-51868No hitNo description
PfamPF002493.1E-101868IPR001005SANT/Myb domain
SMARTSM002976.5E-12111410IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.5E-16302427IPR001487Bromodomain
SuperFamilySSF473701.96E-17305414IPR001487Bromodomain
CDDcd043694.36E-14314405No hitNo description
PfamPF004392.0E-9326395IPR001487Bromodomain
PROSITE profilePS5001410.429326391IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MIFLMDKPAN FSEKQTPTWG TWEELLLACA VHRFGTQSWD SVATELRKRS SNLHLLTPHA  60
CKRKFHDLRR RFNDAVSAAS DDDKSPILWL DQLRQRRLDE LRLELQRYDR SIVSLQSKVE  120
RLKEVREQSL RETEKPVEKS DLEKTQEVEI KPADVSPEKK DISVRDGRSF DESKTTDPKP  180
EEPGTGDADT GNGSEPDEPG EAAGEEIGTA DKSSNPAVED SCNGSSDSVA KEPAVMESEK  240
GNSRELRESV AESKGGEEGT KESRQSSSDV QSSASLSRKA GEEPEPVGPE DHGEPDQEDQ  300
SPAMKGVPVE SQPLVDFLEI LRSLKFASFF ERRLHSQDYT KMIRQHVDFE MVQTRLEGGW  360
YSRCSRSLFF RDMLLICNNA IVFFGKKSPE YKAACELRSL VSKEMACLPP KQEPPPKEET  420
PTQPAPPVNP EPETSDSLLA KSKLSLPLNA CRKRSSITAR ASTSSSGPER RKEQASTFRD  480
VKPAINWKQK EESSDEIEKL HVTKRRRKER RRSSTRNNMT KNVRTRSNTN NERNSDVNEN  540
SESKAEMEKK SRVLSSNENS ESKAETEKKS NNNAGGKKQS AANFLSRIKS SSSKTVSLLE  600
ASKTPENNSK GGRAEQRKNG NGKGNTQKDQ GSRRGSGGRQ AAKEQDSPSK RNVGRPSKRA  660
AATMAGPAKR ARGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003389.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348969.10.0PREDICTED: uncharacterized protein DDB_G0284459-like
TrEMBLA0A498I3T20.0A0A498I3T2_MALDO; Uncharacterized protein
STRINGXP_009348969.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.17e-60DNA-binding bromodomain-containing protein