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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pbr003296.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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| Family |
C3H |
| Protein Properties |
Length: 303aa MW: 32002 Da PI: 9.5736 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr003296.1 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 25.8 | 1.8e-08 | 106 | 131 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ + Ck+Gd+C+FaHg+
Pbr003296.1 106 KTRLCNKYNTVEGCKFGDKCHFAHGE 131
8*********99************96 PP
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| 2 | zf-CCCH | 36.3 | 9.1e-12 | 269 | 294 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + GtC +GdrC+FaHg+
Pbr003296.1 269 FKTKLCENFTK-GTCTFGDRCHFAHGQ 294
69*********.*************97 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.042 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.7 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.8E-6 | 40 | 65 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.1E-7 | 41 | 64 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 1.8 | 47 | 64 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 4.4E-14 | 102 | 135 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.62E-8 | 102 | 135 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.507 | 104 | 132 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0018 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-5 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 4.68E-14 | 166 | 246 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 8.3E-10 | 174 | 244 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 4.2E-14 | 174 | 244 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 13.565 | 175 | 239 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 6.89E-13 | 177 | 239 | No hit | No description |
| Pfam | PF00013 | 3.2E-10 | 177 | 241 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 8.6E-17 | 266 | 299 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.35E-9 | 267 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.8E-8 | 268 | 294 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.206 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-9 | 269 | 294 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MEFGGGGRKR GRPEAGHFNG NGGFKKSKPE MESFQPGIGS KSKPCTKFFS TSGCPFGEGC 60
HFLHYVPGGI KAVSQMTGSN PTHPPPPRNS AAPPSFPDGS SPPTVKTRLC NKYNTVEGCK 120
FGDKCHFAHG EWELGRPTAQ SYEDPRAGGG FSGRMGGRME PPPPAHGAVA SFGATATAKI 180
SVDASLAGAI IGKNGVHSKQ ICRVTGAKLS IREHETDHKL RNIELEGTLD QIKDASAMVR 240
ELIGNVSSGA GTHNMRNPAI SASSPASNFK TKLCENFTKG TCTFGDRCHF AHGQEELRRS 300
AM*
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