PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003291.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 716aa    MW: 79253.9 Da    PI: 10.6033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003291.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.7e-101060244
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrw 44
                     ++W t E++llv+av+++G+ +W+++a ++g        + +++ +c++++
      Pbr003291.1 10 QPWGTLEELLLVCAVNRHGTQSWDSVALEVGrrcsptatTLLSADNCRDKF 60
                     79*****************************77777777667777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0019866IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-4943IPR009057Homeodomain-like
PfamPF002494.3E-91061IPR001005SANT/Myb domain
CDDcd001674.01E-41160No hitNo description
SMARTSM002979.5E-13102445IPR001487Bromodomain
SuperFamilySSF473706.93E-18346446IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.2E-15347447IPR001487Bromodomain
CDDcd043695.02E-15347440No hitNo description
PfamPF004393.4E-10349430IPR001487Bromodomain
PROSITE profilePS5001411.077355426IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MARERGTSAQ PWGTLEELLL VCAVNRHGTQ SWDSVALEVG RRCSPTATTL LSADNCRDKF  60
ADIKRRFVSE DVDDGSSGSL GAMVDELRRL RVAELRREVR RRDVSIVSLE LKVKRLVEER  120
ERSLKEDAGA NRPSKDLKRR GDDQRDGSPE NLAGKMNSGE DFGSDFNSDE RENRSFNESN  180
STSQRGDAKG NGATEKLAEE PRTDGNEPDP IRAKIRSEPD RDCSVNGKVA DDDDEDNQNN  240
NKKGGDDTAK ASRLGESSEL WESGGESKRE GKRGGGGAAA SRQQNSDVQS SASLSKRKRR  300
RGRGGEGGGG SRSRSRSSSG EEAEGDEVSP ATSKGVKQLK LVKPEPLMKV LKIIRSHRLG  360
SVFERRLRSQ ESERYKSLIR QHMDLHVIQS KLNKGLYTED CIPFFRDLLL LFNNAVVFFR  420
KNSPEHNAAQ ELRSIVLKEM NDQLPNPQPA TGRVTSNVPK IETKAPKIEP DASEKPTKSS  480
IVVCGKRGSV NALSEGGAKS RKGDKVEEKA KAANEKKMDG AASVKVEDKG IRRRRTQERG  540
GRRGTSTRGR KAEKPTKPHE YGINELSSHD GLEPLEAEKE KKENRRKKQG AARFLKRMKQ  600
NWPSTEVKKE TSDGSEDDSE ESEDEKKKKP TTRSRKKPEV ERNERVTRSS TGSGGGRGGG  660
RRCQESNARG RRGVGRPPKR PETAAAEVGS RKRGRENGEA DQVGSTGRRR KRTRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300KRKRRR
2296300RKRRR
3690711RKRGRENGEADQVGSTGRRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003291.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364151.20.0PREDICTED: uncharacterized protein LOC103954069
TrEMBLA0A498IV630.0A0A498IV63_MALDO; Uncharacterized protein
STRINGXP_009364151.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-28DNA-binding bromodomain-containing protein