PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003216.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 334aa    MW: 37172 Da    PI: 6.515
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003216.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.91.3e-0835741250
                 HHHHHHHHHHHHHHHHHHHHT-EEEEE.EE-TTSEEEEEE CS
       SRF-TF 12 tfskRrngilKKAeELSvLCdaevavi.ifsstgklyeys 50
                 +  +R ++++ KA  L  LC+a+v+v+ +++++ k++ ++
  Pbr003216.1 35 STMQRSATVMRKAMNLNKLCGAQVCVVaYIGPNAKVKVWP 74
                 4478*********************99678******9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.09E-82299IPR002100Transcription factor, MADS-box
PfamPF003199.2E-63873IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MKGNSARPRR DNGEEQRLAK RRKLRRQQQS EQRKSTMQRS ATVMRKAMNL NKLCGAQVCV  60
VAYIGPNAKV KVWPEDEDLA KAIISKHQAA AIKNRNNPKT REVNIYNFFQ GKMKQLEQKI  120
ELNDKELDAF SEDSLMDLAA FLESKLQKLD YLVRSIEGKS VVDLPYGYDD CNLVHKEPHV  180
QQPLFDPILN CSGNPTMMGF EGQTMFSTAT ATATWPWQNS LADGHYQSAG FANCSNCNMM  240
TAGLVDPSVS AEAGTSGPST LAVDQNFAWM GSDNWENNVN VLGVEDRPGS MPVFDGSDNF  300
GVMNNNLLPQ QCMPSQLDDS FPITSWRNLL SFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003216.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348874.10.0PREDICTED: agamous-like MADS-box protein AGL81
TrEMBLA0A498KUM80.0A0A498KUM8_MALDO; Uncharacterized protein
STRINGXP_009348874.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1547579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.17e-10AGAMOUS-like 78