PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr002958.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 335aa MW: 36787.3 Da PI: 8.7124

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr002958.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.2	1.1e-32	167	253	14	100
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqq++++l+ael+++++e Pbr002958.1 167 XECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPETQRADAANSLVYEANVRLRDPVYGCMGAISALQQEVQSLQAELNAVRDE 253 58********************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.301	131	254	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-32	167	251	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MVTENECVSS NIVSKEASVA NSSCRVYYGE AGVIPFKWES QPGTPKHKFS ESSLPPLTPP 60 PSYSTTRPSS FKHTQQNPSS KTKFLGTILS RLRERVDEIG KKFKRETDAS SHYQMGRRHM 120 LGPPGTLNTI TPCAACKLLR RRCAQEXXXX XXXXXXXXXX XXXXXXXECP FSPYFSPHEP 180 QKFASVHKVF GASNVSKMLM EVPETQRADA ANSLVYEANV RLRDPVYGCM GAISALQQEV 240 QSLQAELNAV RDEILKCKYR EANLLPSNSH HMALFSTSGA VSAASLPQTP QPTPPPPPPP 300 PMPPTSSSSS MYTNQQTSAA DYSSLSSENV SFFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-38	124	267	3	124	LOB family transfactor Ramosa2.1
5ly0_B	5e-38	124	267	3	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr002958.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009363833.1	1e-137	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_009363834.1	1e-137	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_018504565.1	1e-137	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_018504566.1	1e-137	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_018504567.1	1e-137	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_018504568.1	1e-137	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	3e-79	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A498JI09	1e-130	A0A498JI09_MALDO; Uncharacterized protein
STRING	XP_009363833.1	1e-136	(Pyrus x bretschneideri)
STRING	XP_009363848.1	1e-136	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-81	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]