PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002685.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 398aa    MW: 42845.4 Da    PI: 9.6544
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002685.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31328386259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp ++++tYegeH+h 
  Pbr002685.1 328 ADEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 386
                  69************************9888****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.3E-19272325IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-32315386IPR003657WRKY domain
PROSITE profilePS5081130.492322388IPR003657WRKY domain
SuperFamilySSF1182904.97E-26325386IPR003657WRKY domain
SMARTSM007743.0E-37327387IPR003657WRKY domain
PfamPF031061.3E-26329385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MTLELMNFPK MEDQKAIQEA ASQGLQSMEH LIRFLSYQQQ QSNNQSARVD CTDITDHTVS  60
KFKKVISLLN RTGHARFRRG PVQPIQPVHF PTSDPLSSQT LNLASALNLT PTPAPAPVTV  120
PAIVPPTPIE SCFVQSQPHS MTLDFTRPNA FASNPKSAEI EFAKESFSVS SSSSFMSSAI  180
TGDGSVSNGK LGSSIFLAPA PAVSGAKPPL STAPFKKRCH EHDQSDDTSC KFSGSIPGDG  240
SVSNGKLGSS IFLAPAPAVS GAKPPLSTAP FKKRCHEHDQ SDDTSCKFSG SGSASGSGKC  300
HCSKRRKNRV KKTIRVPAIS SKIADIPADE YSWRKYGQKP IKGSPYPRGY YKCSTVRGCP  360
ARKHVERAPD DPAMLIVTYE GEHRHARENV GLVFEST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21315385271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002685.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9960680.0KJ996068.1 Pyrus x bretschneideri WRKY domain class transcription factor (WRKY16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504520.10.0PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SJA81e-119WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLA0A498HPC11e-180A0A498HPC1_MALDO; Uncharacterized protein
STRINGXP_009363626.10.0(Pyrus x bretschneideri)
STRINGXP_009367997.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-109WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  2. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]