PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr002548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 352aa MW: 39815.2 Da PI: 4.7847 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.6 | 4e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v s + Pbr002548.1 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVSS-Q 101 79****************************.99**************96435566888*************************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLv+y+grap+g +t+Wvmheyrl Pbr002548.1 102 SRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 99****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-64 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.845 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MAPMSLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVSS QSRAVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLVDSVCAN ASSSLKDSYA LCRVFKKTIQ MPQNNKEEKP VGINNADKDS 180 IWVSNEQLFG KENSGINEGA SRGIETDQDG NYSNHDYPKF PSDTSSSDLT QGTPTENGIA 240 DDLQAPFTSD EANSSADLYS FGVHCSSDLI QETYIPHNTS VLNSYQFPYP PLQLEDFPQI 300 NLAAETKTAK PEIIDEYMLY DKFKGYMNGT FEEIFSLCSS QDNSVALSMQ D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-61 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-61 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-61 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-61 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-61 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-61 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-61 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-61 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-61 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-61 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-61 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-61 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-61 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-61 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr002548.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009363322.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
TrEMBL | A0A498JYR8 | 0.0 | A0A498JYR8_MALDO; Uncharacterized protein | ||||
STRING | XP_009363322.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10508 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-109 | NAC domain containing protein 20 |