PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 242aa    MW: 26305.2 Da    PI: 5.6768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002460.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1870120155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Pbr002460.1  70 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 120
                  68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1270120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3271129IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2171129IPR016177DNA-binding domain
PROSITE profilePS5103223.16971128IPR001471AP2/ERF domain
SMARTSM003806.1E-3771134IPR001471AP2/ERF domain
CDDcd000182.51E-3372130No hitNo description
PRINTSPR003672.1E-107283IPR001471AP2/ERF domain
PRINTSPR003672.1E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAPEPNISEA ESTSNSPSCS SGLLHTRPNS TSNTPSTITK KPSSEQQQQQ QVILKRKRHD  60
DSNVNSSKHP VYRGVRMRNW GKWVSEIREP RKKSRIWLGT FSTPEMAARA HDVAALSIKG  120
SSAILNFPEL TELLPRPASL KPQDVQAAAT KAAAMVHLNS TTSSSSSSSS SLLLSQSEGS  180
DSEELGEIVE LPNIEGSFES PESRNEFILV YDSLDAWVYP SLGVEGVELN LWGFFSSDIS  240
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1966128972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002460.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324720.0GU732472.1 Malus x domestica AP2 domain class transcription factor (AP2D48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377993.11e-175PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD36e-60DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLD5L1321e-137D5L132_MALDO; AP2 domain class transcription factor
STRINGXP_009377993.11e-174(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]