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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr002398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 362aa MW: 40671.5 Da PI: 7.0337 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106 | 1.9e-33 | 199 | 256 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+Hnh+ Pbr002398.1 199 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCIVKKRVERSFQDPSIVITTYEGQHNHQ 256 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-34 | 183 | 258 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-29 | 191 | 258 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.133 | 193 | 258 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-38 | 198 | 257 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-26 | 199 | 256 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MSNERKNPYQ YDPFDYNPHE INKSSFPFFN YGNSSTCQNQ PHDPQTLNGF ESDHPNPFMS 60 FTDCLHGSLD YNTLSKAFDM SCSSSEVISP PLDHDNNSNK AAGVGDHSVG TTSTTENPST 120 PNYSSISSSS NEAAGAAGDD QVLDDDSDHK SMKNKQPKLG SDGDHEDKSK KGSKAKKKEK 180 PQREPRFAFL TKSEVDHLED GYRWRKYGQK AVKNSPYPRS YYRCTTQKCI VKKRVERSFQ 240 DPSIVITTYE GQHNHQCPAT LRGNLNLNAV GMLSPNSLLA AAPLNGSARY SHEFLAQFLP 300 VNNQVELPNH YHDHPPSSML YSNLMNPHRH HHHQQQQQQL HAPDYGLLQD LVHSFSHKQE 360 P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-28 | 191 | 259 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-28 | 191 | 259 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr002398.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009377402.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | A0A498HE44 | 0.0 | A0A498HE44_MALDO; Uncharacterized protein | ||||
STRING | XP_009377402.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2231 | 34 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 9e-54 | WRKY DNA-binding protein 28 |