PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr002083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 713aa MW: 75975.4 Da PI: 5.4473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4e-19 | 512 | 561 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa++ l+g Pbr002083.1 512 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARILRG 561 69*******.**********883....5***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51445 | 6.47E-93 | 26 | 342 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF00332 | 2.1E-96 | 26 | 342 | IPR000490 | Glycoside hydrolase family 17 |
Gene3D | G3DSA:3.20.20.80 | 2.4E-125 | 26 | 342 | IPR013781 | Glycoside hydrolase, catalytic domain |
PROSITE pattern | PS00587 | 0 | 257 | 270 | IPR000490 | Glycoside hydrolase family 17 |
SMART | SM00768 | 1.5E-41 | 374 | 455 | IPR012946 | X8 domain |
Pfam | PF07983 | 5.3E-22 | 374 | 445 | IPR012946 | X8 domain |
Pfam | PF00847 | 1.4E-11 | 512 | 561 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 512 | 569 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-35 | 512 | 576 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 512 | 571 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.40E-17 | 512 | 571 | No hit | No description |
PROSITE profile | PS51032 | 23.011 | 512 | 569 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 513 | 524 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 535 | 551 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MATFTFPLFL SLLLPLFAFA AAAGTVGINY GRIADNLPPP EKVVALFKSQ GINKVKLYDT 60 DAAVLTALAN SGIGVVVAIP NELLSSAASD PSFADKWVQS NISQYHPKTQ IEAIAVGNEV 120 FADPNNTTQF LVPAIKNIQS SLVKYNLSSI KLSSPFALSA LNSSYPPSAG AFKPDLIEPV 180 IKPFLEFLTQ TSSYLMINAY PFFAYESTSD KISLDYALFR TNPGNPDSGN GLKYYSLLDA 240 QIDAVFAAMS AVGYGDIKLV VTETGWPSNG DENEIGAGKA NAAAYNGNLV KRVLTGGGTP 300 LKPNDPLNVY LFALFNEDQK TGPTSERNYG LFYPDETKVY DIPLTVAGLS GAQSSPANES 360 KVQVPAASPS AGNTWCVANG KAGEEKLQAA LDYACGEGGA DCRSIQEGST CFNPNTLEAH 420 ASYAFNSFYQ KKARGTGTCD FGGAAYVVAQ PPTRFLAMRR GGGAATRPAA PPGPPPXXXX 480 XXXXXXXXXX XXPAAPPAEP TGSRPCIGKE VRYRGVRKRP WGRFAAEIRD PWKKTRVWLG 540 TFDSAEDAAR AYDAAARILR GPKAKTNFQI SCAYPSFYNN PTDPAIEAKL FGSGYGFQDH 600 PAVDPQRPAS SSLSSTVESF SGPRPPLQST TVAAELTRRK RQPRTPPVVP EDCHSDCDSS 660 SSVVEDDGDF VASSSFRKAP LPFDLNFPPL DVDGESGGGV DGQDLRCTAL CL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ghs_A | 2e-71 | 26 | 342 | 1 | 304 | 1,3-BETA-GLUCANASE |
1ghs_B | 2e-71 | 26 | 342 | 1 | 304 | 1,3-BETA-GLUCANASE |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr002083.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732429 | 0.0 | GU732429.1 Malus x domestica AP2 domain class transcription factor (AP2D5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009348307.1 | 0.0 | PREDICTED: glucan endo-1,3-beta-glucosidase 7-like | ||||
TrEMBL | A0A498IGT3 | 0.0 | A0A498IGT3_MALDO; Uncharacterized protein | ||||
STRING | XP_009348307.1 | 0.0 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 2e-28 | ethylene responsive element binding factor 3 |