PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002042.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 485aa    MW: 53987.3 Da    PI: 9.3489
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002042.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95.3e-1371117155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d        +++lg ++ +e Aa+a++ a++k++g
  Pbr002042.1  71 SIYRGVTRHRWTGRYEAHLWD--------KIYLGAYDDEEAAARAYDLAALKYWG 117
                  57****************999........79**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1671126IPR016177DNA-binding domain
PfamPF008472.1E-971117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-1372126IPR001471AP2/ERF domain
PROSITE profilePS5103218.83472125IPR001471AP2/ERF domain
SMARTSM003804.0E-2172131IPR001471AP2/ERF domain
PRINTSPR003675.3E-57384IPR001471AP2/ERF domain
PRINTSPR003675.3E-5107127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MASSSSDPGP KTESGSGGGS GGGGAEASEA VIASDQLMVY RGVKKSKKER GCTAKERISK  60
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKIYLGAYDD EEAAARAYDL AALKYWGPGT  120
LINFPVTDYT RDLEEMQNVS REEYLASLRR KSSGFSRGIS KFRGLSSRWE PSLGRMGGSE  180
YFNSTHYGVD PATESEILGA LCIERKIDLT SYIKWWGPNR SRQAETSMKF SEETKHGCVG  240
DIGVELKTLE WGIQPTEPYQ MPRLGISRVS KKHKGTRVSA MSILSRSAAY KNLQEKASRK  300
EENNADNDEN ENKNIIHKMD YGKAIEKSTS HDERLGSVLG MSGGMSLQTD VFPLGPFLSA  360
PLLTNYNAVD PLVDPILWTS LAPVLPSGIS RTTERQVQLS LYFSPTNDVA CPSVLKVGEV  420
HANSCLTTSS QKVLPMDYVL QTQERQVCEP LMWKVRKHLM RPWQRRGLYC MGCRIYRKGV  480
HYLF*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002042.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948770.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-146AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A482LUP60.0A0A482LUP6_9ROSA; Transcription factor AP2-2
STRINGXP_009363210.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-131AP2 family protein