PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr002006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 402aa MW: 43689.5 Da PI: 8.2621 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 119 | 164 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W+ Ia+++ gR++k+c++rw++ Pbr002006.1 119 RGHWRPAEDSKLKELVGQYGPQNWNVIAEHLD-GRSGKSCRLRWFNQ 164 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58 | 2.1e-18 | 171 | 214 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ Pbr002006.1 171 RGAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 214 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.707 | 114 | 165 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-28 | 118 | 212 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 118 | 167 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 119 | 164 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-26 | 120 | 172 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.71E-13 | 122 | 163 | No hit | No description |
PROSITE profile | PS51294 | 27.18 | 166 | 220 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 170 | 218 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 171 | 213 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-21 | 173 | 218 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-7 | 182 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MAFRHLMSDC DGFTRYQDLN FLPPPPVSNQ LSLSNIFGGS TSAMGVVPFS PSSSQQTNKP 60 WSFQALENGG PKNISDLGVL SGVDQKRPTP LNLNLVGEED DDEGRSPAGG RASAKSCVRG 120 HWRPAEDSKL KELVGQYGPQ NWNVIAEHLD GRSGKSCRLR WFNQLDPRIN RGAFSEEEEE 180 RLLAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARSR REQSHVFKRR KPSSPPPPSP 240 LPHVVANFPK NPSTSTESTV SISTINDDST QSASTCTNLS LTPSNKPPPT FFSKFHPFHR 300 PQIIGSPIGS SSSSDGGFNK MIGSNGNGFC ESTGPVRGVG AAAAAMKGVD NSGHQSDSEI 360 SGDESVTTTR TNWSLSREDQ DLHHEKTTTI HFIDFLGVGT A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-33 | 118 | 218 | 6 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr002006.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009348255.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | A0A498IHX0 | 0.0 | A0A498IHX0_MALDO; Uncharacterized protein | ||||
STRING | XP_009348255.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 7e-65 | myb domain protein 105 |