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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr001932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 482aa MW: 54797.4 Da PI: 5.8498 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.7e-18 | 215 | 261 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+q+G + W+ Ia++++ gR +kqc++rw+++l Pbr001932.1 215 KGQWTIEEDRLLIQLVEQFGVRKWSHIAQMLP-GRIGKQCRERWHNHL 261 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 267 | 309 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+ Pbr001932.1 267 KDTWSEEEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 309 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 30.446 | 210 | 265 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.02E-32 | 212 | 308 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-16 | 214 | 263 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 216 | 266 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-15 | 218 | 261 | No hit | No description |
Pfam | PF13921 | 1.8E-18 | 218 | 275 | No hit | No description |
SMART | SM00717 | 8.9E-18 | 266 | 314 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.269 | 266 | 316 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 267 | 314 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.12E-14 | 269 | 312 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MELNNLRENL VSQIHIPLLT SENYVKPCTT KDEFLFEGSS SSRGNYNYLQ DFHHLDHQFQ 60 VNVSSSNPMF GTHSPCFDPY NDTCYPYDQN SSHQDVNFYE CKPLNVAENN GAHGQVLDNF 120 QGGSYLKFST HDRSSNPLDH VVGTSFHMTA TNFLPLDCSQ DIKPVNFLVP DEVSCINNAD 180 QNAYYRKFGM NGKSRVTGIT RGSTVEGRKK SNVVKGQWTI EEDRLLIQLV EQFGVRKWSH 240 IAQMLPGRIG KQCRERWHNH LRPDIKKDTW SEEEDKILIQ AHAEIGNKWA EIAKRLPGRT 300 ENSIKNHWNA TKRRQYSKRK CRSKYARSSV LQEYIKSLNL DSASNSTGRQ RKNSSANNNG 360 VSTSTKAAAA AHQPQTNLEF SSANDQLVPS YNDFNEDPNF CFDENIFEEG CSIDSLLDDI 420 PCAPDVGEKN SNFDGKNQID YGNVDKGNFD EKDFDVEVQV DWESNEVKKE MDLVEMISQV 480 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 8e-46 | 213 | 315 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 8e-46 | 213 | 315 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr001932.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009363046.1 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 1e-99 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A498I6D9 | 0.0 | A0A498I6D9_MALDO; Uncharacterized protein | ||||
STRING | XP_009363046.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-102 | myb domain protein 98 |
Publications ? help Back to Top | |||
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