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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr001754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 22227.8 Da PI: 6.6986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.5e-10 | 47 | 87 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P +Kl+ +++Le+A++Y+k L Pbr001754.1 47 ARERRHRISDRFKILQSLVPGG-----TKLDTVSMLEEAIHYVKFL 87 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.44 | 38 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-13 | 43 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-11 | 44 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-12 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.45E-14 | 44 | 91 | No hit | No description |
Pfam | PF00010 | 6.1E-8 | 47 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDYLTTTDSN SNNFASSCSS VTKNNRGGGK NKSNGVRLST DPQSVAARER RHRISDRFKI 60 LQSLVPGGTK LDTVSMLEEA IHYVKFLKTQ IWLHETMINI ADDYHDPLSS SSPPSMLMDI 120 PAHDHDLHPI GFLDHDLCPT GCFDHLSHQL HQQTHDVYAH SDFVSAAASV QPPSPPAVNI 180 PIMPEYNCFQ RSRNNWQY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr001754.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009348213.1 | 1e-148 | PREDICTED: transcription factor bHLH140-like | ||||
Refseq | XP_009376442.1 | 1e-148 | PREDICTED: transcription factor bHLH140-like | ||||
Swissprot | Q9M041 | 7e-29 | BH140_ARATH; Transcription factor bHLH140 | ||||
TrEMBL | A0A498K2E0 | 1e-124 | A0A498K2E0_MALDO; Uncharacterized protein | ||||
STRING | XP_009348213.1 | 1e-148 | (Pyrus x bretschneideri) | ||||
STRING | XP_009376442.1 | 1e-148 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7167 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 6e-30 | APRATAXIN-like |
Publications ? help Back to Top | |||
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