PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001571.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 305aa    MW: 34738.7 Da    PI: 5.3475
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001571.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-1985138356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++++eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  Pbr001571.1  85 KKRRLNSEQVKALERNFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 138
                  456899***********************************************9 PP
2HD-ZIP_I/II128.52.9e-4185176293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrl++eqvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk+ yd lk + ++Le+++++L+e+l++
  Pbr001571.1  85 KKRRLNSEQVKALERNFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYSILKTDYDGLKLNFDSLERQNKALAEKLSQ 176
                  9**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-1980142IPR009057Homeodomain-like
PROSITE profilePS5007117.5480140IPR001356Homeobox domain
SMARTSM003892.0E-1783144IPR001356Homeobox domain
CDDcd000862.43E-1585141No hitNo description
PfamPF000461.5E-1685138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-2087147IPR009057Homeodomain-like
PRINTSPR000318.8E-6111120IPR000047Helix-turn-helix motif
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PRINTSPR000318.8E-6120136IPR000047Helix-turn-helix motif
PfamPF021834.4E-14140181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKRFSXXXXX XXXXXXXXXX XXXXXXXXXX XXXFSSSDSL GALVSNFPSK EEGKLAKDSY  60
GYSKELQAML DSLNQEDVEE EMSGKKRRLN SEQVKALERN FEVENKLEPE RKVKLAEELG  120
LQPRQVAIWF QNRRARWKTK QLERDYSILK TDYDGLKLNF DSLERQNKAL AEKLSQLKAK  180
LYGESAQRND SVKEESPISM CKSSENLEVD LIKNLKSKDG SSDSDSNGVL MKEESNGNSS  240
LGFNNNRNSI SSNSMVNWFQ LSDSRSVGGK GFQAQTVRME EQSFFSTDES CNFFSVDQAP  300
SLHW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001571.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348036.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A498HWK91e-176A0A498HWK9_MALDO; Uncharacterized protein
STRINGXP_009348036.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-55homeobox protein 16