PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001471.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 584aa    MW: 64203.6 Da    PI: 5.3117
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001471.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29278337159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r++ed +++++tYeg+Hnh+
  Pbr001471.1 278 MNDGCQWRKYGQKISKGTPCPRAYYRCTVAvGCPVRKQVQRCQEDMSILITTYEGTHNHP 337
                  58****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-31263339IPR003657WRKY domain
SuperFamilySSF1182901.19E-26271339IPR003657WRKY domain
PROSITE profilePS5081128.92273339IPR003657WRKY domain
SMARTSM007749.7E-36278338IPR003657WRKY domain
PfamPF031066.1E-26279337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MGTREQEKEV DIDLSLQIDA KEEKREEGVD DEEDEDDHRV DDGVEEAGAE EKEGELEPRV  60
QNNKLKTAEA GAGEEEDHDA SVVETSLREN NMKTDQELSV LQMEMSRMKE ENKVLRKVVE  120
QTMKDYYDLQ MKFTVIHQSN QNKDPQTFLS LDGNDPNATQ GPKMSSKMLD ISHRSPVPSP  180
KRDEVTDEES HLGLSLRLQT SSATTANQLR GREEEDDDKE GINNKEGLTR TGSLTSSSVQ  240
LQNKLQRTEL AGITSHGAPH PNRKARVSVR ARCEYATMND GCQWRKYGQK ISKGTPCPRA  300
YYRCTVAVGC PVRKQVQRCQ EDMSILITTY EGTHNHPLPV GATAMASTAS AAASRMLLDS  360
SNHQLVDGTP SKYTQASLPY YNSNTPHNML NLNPSSHSSS NYRIINPHDP SKGLVLDLTN  420
NFYDTTTSQP QNIPMAMGSS SSSAPPGFGS NWMMSNISSR SANYHTSNSL TNRLLANGSR  480
SSGIVLADDQ KGNWRSGEEN MSLLAENVSA IASDPKFRVA VAAAITSLIN TDNHATTSHP  540
ALTAFAPRDH EDNNGSASTS NNWAVDQQSL SSKGKLIRKN TLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21265341176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001471.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347941.10.0PREDICTED: probable WRKY transcription factor 9
TrEMBLA0A498HVS60.0A0A498HVS6_MALDO; Uncharacterized protein
STRINGXP_009347941.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-61WRKY DNA-binding protein 9