PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001460.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 117aa    MW: 13370.4 Da    PI: 9.7049
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001460.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.2e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien+s rqvtfskRr+g+lKKA+ELSvLCdaevaviifs++ k+ye++s
  Pbr001460.1  9 KRIENNSSRQVTFSKRRKGLLKKAYELSVLCDAEVAVIIFSQKAKIYEFAS 59
                 79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-33387IPR002100Transcription factor, MADS-box
CDDcd002651.04E-42378No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-303859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MVRGKIEMKR IENNSSRQVT FSKRRKGLLK KAYELSVLCD AEVAVIIFSQ KAKIYEFASS  60
DMQRTINRYH KHENGSGQTN KVEVEQYVQI DGLGNEQMQY MREVLNPLCG AFAVHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-22185186MEF2 CHIMERA
6bz1_B3e-22185186MEF2 CHIMERA
6bz1_C3e-22185186MEF2 CHIMERA
6bz1_D3e-22185186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001460.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640061e-145KP164006.1 Pyrus pyrifolia clone PpSOC1-1 SOC1 MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347895.15e-58PREDICTED: MADS-box protein AGL42-like
RefseqXP_009347896.15e-58PREDICTED: MADS-box protein AGL42-like
SwissprotQ9FIS19e-35AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A0D4ZY405e-56A0A0D4ZY40_PYRPY; SOC1 MADS-box protein
STRINGXP_009347897.12e-57(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.44e-37AGAMOUS-like 42