PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001425.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 348aa    MW: 38033.5 Da    PI: 6.9583
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001425.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.1e-29167227259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqKe+ +s+fprsYYrCt++   +Cp+kk+v+r ++dp ++e++Y+geH+++
  Pbr001425.1 167 EDGFTWRKYGQKEIMNSRFPRSYYRCTHQklyNCPAKKQVQRLDNDPLTFEVMYRGEHTCH 227
                  7****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27163227IPR003657WRKY domain
SuperFamilySSF1182904.97E-26164228IPR003657WRKY domain
SMARTSM007741.6E-37166228IPR003657WRKY domain
PROSITE profilePS5081120.071167229IPR003657WRKY domain
PfamPF031066.9E-27167227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEIISLILH GCMLAGKLKE TLPNLATQPD LLSNSLEEIT KIFGSAKERV LHSQGSSSTS  60
YLHSLLTLEH QQIGTSVEQW LRSNTQAMDI IQTQLAADRN EAKVSGGVDV RVSEAVIGGF  120
QAADVSASNV NIASSSTQRP RRRKDQGVIN KITVPAPRIG NTEIPPEDGF TWRKYGQKEI  180
MNSRFPRSYY RCTHQKLYNC PAKKQVQRLD NDPLTFEVMY RGEHTCHISA TAPSTLPPPT  240
ADHHIPQDHM SATTEPPTSL WLSMDFNPIR QGGSSSGVIG GGRGSGRGSG DGVGTSTGTR  300
YGKEVDFPVM DLADTMFNSG SSSSSMDFIF NSAEHRWQSD DKKNLDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20167226968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139143PRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362784.20.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A498KKI40.0A0A498KKI4_MALDO; Uncharacterized protein
STRINGXP_009362784.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-54WRKY DNA-binding protein 55