PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001424.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 303aa    MW: 34327.3 Da    PI: 6.0828
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001424.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.33.2e-23127187259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg +WrKYGqK + ++++pr+Y+rCt +   gC+++k+v++ +++p   +itY geH+++
  Pbr001424.1 127 EDGQAWRKYGQKIILNAPYPRAYFRCTRKfdqGCKATKQVQQIQDNPLSYQITYIGEHTCR 187
                  89*************************99999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-23113187IPR003657WRKY domain
SuperFamilySSF1182902.09E-23120187IPR003657WRKY domain
PROSITE profilePS5081120.208121189IPR003657WRKY domain
SMARTSM007741.4E-35126188IPR003657WRKY domain
PfamPF031064.0E-23127187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGTNHKRLIE ELHEGRKTAA ELQILLQNQY GDRVLAEELL MKIMMVFAES LSALTASDGH  60
NDHQSAASGE VYQVKPEPSQ VEHSHCCDRS SEDSGESRKT QAFKDRRGCY KRRKTCQSWT  120
VTSNKIEDGQ AWRKYGQKII LNAPYPRAYF RCTRKFDQGC KATKQVQQIQ DNPLSYQITY  180
IGEHTCRAMI KPSPMIIGSN PCESQTVSSE SGTPHHQNPT FFGTSAPSIL NAKQEDYKVG  240
TPSDLTDNSM WHDLKDHLDL SEPVGICVSS NEDVVSNMHW EEDMDYVKCI NFEDVFNFES  300
FQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-25120187269OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001424.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362779.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A498KKJ70.0A0A498KKJ7_MALDO; Uncharacterized protein
STRINGXP_009362779.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-40WRKY DNA-binding protein 70