PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr001363.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 321aa MW: 35750.4 Da PI: 4.8019 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 176 | 226 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ t eeAa a+++a+ +++g Pbr001363.1 176 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETSEEAALAYDRAAFRIRG 226 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 175 | 235 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-37 | 176 | 240 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.48E-33 | 176 | 235 | No hit | No description |
PROSITE profile | PS51032 | 24.302 | 176 | 234 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 176 | 236 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-14 | 176 | 226 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 177 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 200 | 216 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MGNISSPHVM PCLTEQWGNL PFQVDDSEDM IVYNSLRDAF SLGWSPDHTF PFQVDDWEDM 60 INYNSDAFSL GWSPDHTLEC IKPEQAYDLD HLFDQYHDQL PPDLFTQSQP HDFDVSINGN 120 KPSQPLVLPP DTDIPPLDHD DRDQNQVQVG DAVAEQEEVN VNVPKLQKSG VARGRHYRGV 180 RQRPWGKFAA EIRDPAKNGA RVWLGTYETS EEAALAYDRA AFRIRGSKAL LNFPHRIGLN 240 EPPPVRVTGK RKEPEQEAAA SSSTSSSSSS ATPTAAIKRS KLDKSVSSSA DHDDQANVCH 300 TRQKNNTSYM LPLGEQLLVS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-37 | 172 | 241 | 1 | 70 | ATERF1 |
3gcc_A | 2e-37 | 172 | 241 | 1 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr001363.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC770079 | 0.0 | KC770079.1 Pyrus pyrifolia microsatellite TXY215 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362713.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A1ILM2 | 0.0 | A1ILM2_MALDO; Ethylene response factor | ||||
TrEMBL | D9ZIM1 | 0.0 | D9ZIM1_MALDO; AP2D domain class transcription factor | ||||
STRING | XP_009362713.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16916 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 7e-41 | ethylene responsive element binding factor 2 |