PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001240.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 350aa    MW: 38231.8 Da    PI: 5.2278
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001240.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.97.2e-22162222259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK ++++++pr+Y+rCt++    C+++k+v++ ++ p v+ ++Y g+H+++
  Pbr001240.1 162 ADGHAWRKYGQKIIHNAKHPRNYFRCTYKydqACKATKHVQQVQDHPPVFRTIYYGTHKCR 222
                  7***************************99999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-22147222IPR003657WRKY domain
SuperFamilySSF1182904.45E-21155222IPR003657WRKY domain
PROSITE profilePS5081118.613156219IPR003657WRKY domain
SMARTSM007743.7E-30161223IPR003657WRKY domain
PfamPF031063.9E-22163222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEEFIEGREL ASQLSKAFDN RSLVNGEDWG SAEGIVNKIL GSFVGTLLII NGKESVQEFV  60
SDQIQGNSSD VSGGGSGGGS GVGGGGSAVG SGVGDGGSDG GGGAYSSSAD ANHDHAAAMK  120
SEDCTEEEIS CKSTLTFKDG RGSYKRRKTS HSWTRDTPAL IADGHAWRKY GQKIIHNAKH  180
PRNYFRCTYK YDQACKATKH VQQVQDHPPV FRTIYYGTHK CRDYLKTSEL LLDCTSPRDS  240
SQFISFENVN CLTNKQGHPF FASFASSSVE EEVFIREDMP TNDRMVTSDH NHSSPCDHLV  300
SRDLTAFESS GPMSWFSSSI DQYDHEDVFS GMIAESYFDI YNEVLQYGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-211632221069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001240.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347810.10.0PREDICTED: probable WRKY transcription factor 38
TrEMBLA0A498IKM50.0A0A498IKM5_MALDO; Uncharacterized protein
STRINGXP_009347810.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-24WRKY DNA-binding protein 70