PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001238.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 351aa    MW: 39649.7 Da    PI: 6.6393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001238.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.91.8e-22174234259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK+++++++pr+Y+rCt++    C+++k+v++ ++ p ++ +tY g H ++
  Pbr001238.1 174 ADGHAWRKYGQKNIHNAKHPRNYFRCTHKydqACKATKHVQQVQDHPPLFRTTYYGAHSCR 234
                  7***************************99999*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-23164234IPR003657WRKY domain
SuperFamilySSF1182901.31E-21167234IPR003657WRKY domain
PROSITE profilePS5081118.946168232IPR003657WRKY domain
SMARTSM007741.9E-32173235IPR003657WRKY domain
PfamPF031061.3E-22175234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEWSWPESVL SNRERMVEEL IQGRELASQL SRGFDNRPIL VNGVDGGSDE GTVNKILGSF  60
VNALLILNGK ESDQEFVSDQ IQGNSNDVSG GGGADSSSWD GNHDHAAAIK SEDYTEEEIS  120
CKSTSTFKDR RGSYKRRKTS HSWTRDIPAK SFNLLIHFRK TSHSWTRDTP ALIADGHAWR  180
KYGQKNIHNA KHPRNYFRCT HKYDQACKAT KHVQQVQDHP PLFRTTYYGA HSCRDYLKTS  240
ELVLDCTNPR DSSKFISFDN ANCFTNKQEH PFPASFSSSS VKKELIVKAT SDHTVTSHHN  300
HSLPSDYLVL HDDLMEFASS EPMGGFSSSI DQYDHDDVFL RMIAESYFDI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22173234869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001238.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347812.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A498ILB80.0A0A498ILB8_MALDO; Uncharacterized protein
STRINGXP_008388369.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-25WRKY DNA-binding protein 70