PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001198.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 407aa    MW: 45939.6 Da    PI: 7.4333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001198.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51211481128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  ++pGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp  +k +++ewyfFs rd+ky+tg r+nrat +gyWkatgkd++v+s+ +g
  Pbr001198.1  21 MQPGFRFHPTDEELITFYLAFKVYNGSFCG-VRIAEVDLNRCEPWELPDVAKMGDREWYFFSLRDRKYPTGMRTNRATGAGYWKATGKDRQVFSAsTG 117
                  579************************777.45***************888889***************************************98788 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +l g+kktLvfykgrap+g+kt+Wvmheyrl
  Pbr001198.1 118 ALLGVKKTLVFYKGRAPRGHKTKWVMHEYRL 148
                  89***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-619171IPR003441NAC domain
PROSITE profilePS5100557.33421171IPR003441NAC domain
PfamPF023652.5E-2623148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAEIMNELMN GSGEGVNEQG MQPGFRFHPT DEELITFYLA FKVYNGSFCG VRIAEVDLNR  60
CEPWELPDVA KMGDREWYFF SLRDRKYPTG MRTNRATGAG YWKATGKDRQ VFSASTGALL  120
GVKKTLVFYK GRAPRGHKTK WVMHEYRLDG HFSSYRHACK EEWVICRINH KSGDKKSPLL  180
VDHEAAASIN SNCNYLPPLL DPSPALVLQE SCHEFQNPMQ LQVLPPRIHQ DNHDPFFFPA  240
INAMQTHQLP SFSNSLLFKS LFDQDCNSSS STSTIPKQCK TELANYFSRF QTPGNSNNNN  300
NNRTCNKLHN LNLGVELEKN HAHQYQPNAP YHNRHQYNDP LPFDYLDYST SVLGFSAAEA  360
ATTTTITASA TVHAHDTSPS FAFDRAGFQT MLDLPPIKLP GESCRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-48111711165NO APICAL MERISTEM PROTEIN
1ut4_B7e-48111711165NO APICAL MERISTEM PROTEIN
1ut7_A7e-48111711165NO APICAL MERISTEM PROTEIN
1ut7_B7e-48111711165NO APICAL MERISTEM PROTEIN
3swm_A7e-481617115168NAC domain-containing protein 19
3swm_B7e-481617115168NAC domain-containing protein 19
3swm_C7e-481617115168NAC domain-containing protein 19
3swm_D7e-481617115168NAC domain-containing protein 19
3swp_A7e-481617115168NAC domain-containing protein 19
3swp_B7e-481617115168NAC domain-containing protein 19
3swp_C7e-481617115168NAC domain-containing protein 19
3swp_D7e-481617115168NAC domain-containing protein 19
4dul_A7e-48111711165NAC domain-containing protein 19
4dul_B7e-48111711165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001198.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362887.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8515e-90NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A498JSG50.0A0A498JSG5_MALDO; Uncharacterized protein
STRINGXP_009362887.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-91NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]