PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr001159.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 206aa MW: 23504 Da PI: 4.5117

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr001159.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.3	3.5e-37	8	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrF+Ptdeelvv++L++k++ +++ +vi+++++y+++Pw+L+ k+ +e k+wyf+s+r+ +nr+t++gyWk+ g +++++s+ Pbr001159.1 8 LPPGFRFDPTDEELVVDFLQRKAALLPFHP-DVIPDLHLYSYDPWELNGKALSEGKQWYFYSRRA--------QNRVTNNGYWKTLGIEEPIFSSsss 96 79***********************999.99**********97777889***985........589**************9666 PP NAM 96 .kgelvglkktLvfykgrap.kgektdWvmheyrl 128 +++vg+k+ L+f+ g+ap +g kt+W+mheyrl Pbr001159.1 97 nPTKKVGMKRYLTFFVGEAPnSGIKTNWIMHEYRL 131 55566******997762589*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-45	5	170	IPR003441	NAC domain
PROSITE profile	PS51005	44.839	8	171	IPR003441	NAC domain
Pfam	PF02365	9.2E-23	9	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MGDDQFKLPP GFRFDPTDEE LVVDFLQRKA ALLPFHPDVI PDLHLYSYDP WELNGKALSE 60 GKQWYFYSRR AQNRVTNNGY WKTLGIEEPI FSSSSSNPTK KVGMKRYLTF FVGEAPNSGI 120 KTNWIMHEYR LPSSASDCAS SSTTTTSRSS KRRGQSKTEY SGYVLCRVYE RDEEDDDDDG 180 TELSCLDEVF LSLDDLDEIS LPNYN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-38	5	172	14	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-38	5	172	14	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-38	5	172	14	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-38	5	172	14	166	NO APICAL MERISTEM PROTEIN
3swm_A	3e-38	5	172	17	169	NAC domain-containing protein 19
3swm_B	3e-38	5	172	17	169	NAC domain-containing protein 19
3swm_C	3e-38	5	172	17	169	NAC domain-containing protein 19
3swm_D	3e-38	5	172	17	169	NAC domain-containing protein 19
3swp_A	3e-38	5	172	17	169	NAC domain-containing protein 19
3swp_B	3e-38	5	172	17	169	NAC domain-containing protein 19
3swp_C	3e-38	5	172	17	169	NAC domain-containing protein 19
3swp_D	3e-38	5	172	17	169	NAC domain-containing protein 19
4dul_A	2e-38	5	172	14	166	NAC domain-containing protein 19
4dul_B	2e-38	5	172	14	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr001159.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347823.1	1e-152	PREDICTED: NAC domain-containing protein 104-like isoform X2
Swissprot	Q8GWK6	2e-79	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	D9ZJ88	1e-122	D9ZJ88_MALDO; NAC domain class transcription factor
STRING	XP_009354071.1	1e-125	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-75	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]