PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000957.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | CPP | ||||||||
Protein Properties | Length: 914aa MW: 99712.5 Da PI: 7.0935 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.9 | 1.3e-15 | 472 | 508 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +k+CnCkk+kClk+YC+Cfaag++C+e+C C++C+N Pbr000957.1 472 CKRCNCKKTKCLKLYCDCFAAGVYCAETCACQGCFNI 508 79**********************************6 PP | |||||||
2 | TCR | 50.3 | 4.7e-16 | 549 | 587 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+C++CkN Pbr000957.1 549 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCDGCKNV 587 589***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 8.4E-15 | 470 | 511 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.028 | 471 | 589 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.6E-11 | 473 | 507 | IPR005172 | CRC domain |
SMART | SM01114 | 6.8E-17 | 549 | 590 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.4E-11 | 551 | 586 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 914 aa Download sequence Send to blast |
MDSPEIPKIM SNTSPSSDSP PVQESPVFSY ISNLSPIQPV KASHAAQGFP GLSSPPLVFT 60 SPRVNTLRET SFLKRPQYPQ LASAEKPKAQ DEAKKFVDGP VDSKKHINQL QMGSITDTQD 120 CETNSSSEGV DEYLADPMEM DGTNSAQSVN PCLKESKNFY KSEEPSEQAT EDLQGKQTFD 180 AKPVKIKELG HGALPSSEHP KVGSRISVDN AFNGEYHHGL HNQGFRGEHQ DDCDHTCQSP 240 PGRLQIGQVY EDCKENVGGT SKGMVGNMIL HAPNKVKNDQ GGMHRRCLQF EEAPPCATGK 300 RDSSSTEKVN NSEPPASTAE LEIVKVSYAA TSKRQMGASL PPLYGGSSPL TVPKPSGIGL 360 HLNSIVNAVP VVRGATTSIK LADHYIGLQV MKSSAVVSHL LLENVRDNTE TSIAASSSIN 420 QSPHTVEFEH HGSPLEERKS DSQNVDSYKE LNQYSSQKKR KRTPSSKDSD GCKRCNCKKT 480 KCLKLYCDCF AAGVYCAETC ACQGCFNIPD YEDTVLETRQ QIEARNPFAF APKIVQLEEE 540 IQFTPASARH KRGCNCKKSM CLKKYCECYQ ANVGCSSGCR CDGCKNVYGR KGDYGPIDHG 600 VTKDMISDKA GKETFDEKLE MVATKKDALS IELYDSHNHT PLTPSIQCSD HADNVPKSPC 660 LITSYLRSPE SDLTVISSYE KSTISSLRNS ETSRILLETS KELSDMGYYC WQEDYDNIGI 720 ADTFSPRHDX XXXXXXXXXX XHDAAPTICH ITPLSDLCSK ASASSTSSRS HWKNASQIQL 780 CPGSQGLSSN SSLRWCSSPL TPMTRLGGTE CSQGLDFDHG LSDVMQEEMP EILKDISATN 840 KSVKVSSPNK KRVSPPHNHN HELGASSSGS LRSGRKFILK AVPSFPPLTP CSSSKGSNTI 900 QSTGNLHDKG RKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-19 | 475 | 587 | 14 | 121 | Protein lin-54 homolog |
5fd3_B | 3e-19 | 475 | 587 | 14 | 121 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 457 | 462 | KKRKRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000957.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347636.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A498J990 | 0.0 | A0A498J990_MALDO; Uncharacterized protein | ||||
STRING | XP_009347635.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8565 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 3e-62 | Tesmin/TSO1-like CXC domain-containing protein |