PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000523.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 280aa MW: 30853.5 Da PI: 5.1897 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.5 | 3.7e-30 | 84 | 142 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY++eHnh+ Pbr000523.1 84 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTTLVITYSSEHNHS 142 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-31 | 76 | 142 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.641 | 78 | 141 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-25 | 80 | 143 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-35 | 83 | 143 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-25 | 85 | 141 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDPTFFSSNS KQLLSDQEEN DNTTTSTPEN SSDSPPPSTN FSDYSKITTS TSSPKKSGRR 60 AIQKRVVSVP IKGDNSNSST PPPSDSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ 120 VERSRVDPTT LVITYSSEHN HSWLASRNHH NNHNNSSSAA ATKRGPTKTE APEAQQPDHQ 180 DQDLDQDQDS RFADLNHELL IVNDEFVWFA DMETTSSRVL ESPIFAESSS SVGSDSGDKA 240 AMVFPMGEED ESLFADLGEL PECSFVFRYR GVGPQAQIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-19 | 64 | 141 | 6 | 76 | Disease resistance protein RRS1 |
5w3x_D | 2e-19 | 64 | 141 | 6 | 76 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000523.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009351552.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 9e-76 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A498JVG0 | 1e-159 | A0A498JVG0_MALDO; Uncharacterized protein | ||||
STRING | XP_009351552.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 2e-64 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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