PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pbr000432.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WOX

Protein Properties

Length: 468aa MW: 51902.6 Da PI: 8.609

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr000432.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.3	2.3e-17	58	118	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ +l ++ +++V++WFqNr+ + k+ Pbr000432.1 58 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRVQLqeygQVGDANVFYWFQNRKSRSKH 118 89***************99***********************************995 PP
2	Wus_type_Homeobox	110.5	9e-36	57	119	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++k Pbr000432.1 57 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHK 119 689**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.317	54	119	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-12	54	121	IPR009057	Homeodomain-like
SMART	SM00389	3.6E-8	56	123	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-6	57	118	IPR009057	Homeodomain-like
CDD	cd00086	8.58E-8	57	119	No hit	No description
Pfam	PF00046	6.7E-15	58	118	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MASSNRHWPS MFKSKPANCS THQQWQHDIN PSLVSNGCHR PSSYSSVGGC EERSPEPKPR 60 WNPKPEQIRI LEAIFNSGMV NPPRDEIRKI RVQLQEYGQV GDANVFYWFQ NRKSRSKHKL 120 RNLHNSSRQQ QTHHHHTQLP ITTPVSAATT LNIINAAAPS SSSSSSSEKS SPKAQNNKAF 180 SMGFSTHEAS VNSPTASVNQ STNFFQPHHP HHNEVLLESP FFFPVHQANI NPNLTQGFCF 240 SELANVVNVP HHEQTNNNNN NIGPCTNILL SEIMNHGAIS RKEYHHHQED QIKAMKNVDH 300 QQHLNYNIHT TTTPTTAAAS TTPTVAVPSP VIHNSRGGIG EAGAMAPGGV AKSTVFINDV 360 AFEVGVGPFN VREAFGDDAV LIHSSGQPVL TNEWGLTLHS LHHGGFYYLK IDPFTAQESV 420 ESDSKHGGGR GRRNHEVFDE VPFRINVSRV SERDGCRRTL YKLDVPR*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MASSNRHWPS MFKSKPANCS THQQWQHDIN PSLVSNGCHR PSSYSSVGGC EERSPEPKPR  60
WNPKPEQIRI LEAIFNSGMV NPPRDEIRKI RVQLQEYGQV GDANVFYWFQ NRKSRSKHKL  120
RNLHNSSRQQ QTHHHHTQLP ITTPVSAATT LNIINAAAPS SSSSSSSEKS SPKAQNNKAF  180
SMGFSTHEAS VNSPTASVNQ STNFFQPHHP HHNEVLLESP FFFPVHQANI NPNLTQGFCF  240
SELANVVNVP HHEQTNNNNN NIGPCTNILL SEIMNHGAIS RKEYHHHQED QIKAMKNVDH  300
QQHLNYNIHT TTTPTTAAAS TTPTVAVPSP VIHNSRGGIG EAGAMAPGGV AKSTVFINDV  360
AFEVGVGPFN VREAFGDDAV LIHSSGQPVL TNEWGLTLHS LHHGGFYYLK IDPFTAQESV  420
ESDSKHGGGR GRRNHEVFDE VPFRINVSRV SERDGCRRTL YKLDVPR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr000432.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009346011.1	0.0	PREDICTED: WUSCHEL-related homeobox 9
TrEMBL	A0A498JW06	0.0	A0A498JW06_MALDO; Uncharacterized protein
STRING	XP_009346011.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3824	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	2e-63	homeobox-3