PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ARF | ||||||||
Protein Properties | Length: 733aa MW: 79608.5 Da PI: 6.6513 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.8 | 2.3e-24 | 145 | 246 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++e Pbr000415.1 145 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQ--QRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDDGE 238 99****************************9743..345679************************************************..348999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ Pbr000415.1 239 LRLGIRRA 246 9****996 PP | |||||||
2 | Auxin_resp | 111.7 | 7e-37 | 271 | 352 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+ k++F+v+YnPr+s+seF+++ +k++++l++ +s+GmR+km+feted++err++G ++g+s+ldpvrWp+SkWr+L Pbr000415.1 271 VVNAIFAKNAFNVYYNPRSSSSEFIIPSHKFLRSLDHCFSAGMRIKMRFETEDAAERRYTGFITGISELDPVRWPGSKWRCL 352 5789999**************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-40 | 138 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-42 | 140 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.81E-22 | 143 | 245 | No hit | No description |
SMART | SM01019 | 4.0E-23 | 145 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.366 | 145 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-22 | 145 | 246 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-32 | 272 | 352 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MAGLIDLNSA TEDEQTPSSG SPSSASSVSD ALGSSASVCM ELWHACAGPL ISLPKKGSVV 60 VYLPQGHLEQ VSDFPTSAYD LPPHLFCRVV DVKLHAETGT DDVFARVSLV PESEEIEHRL 120 REGETDADAE DDVEAMGTST TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYTQQR 180 PSQELVAKDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGDDGELR 240 LGIRRAAQFK SSATCPTLCS QQLNYSAITD VVNAIFAKNA FNVYYNPRSS SSEFIIPSHK 300 FLRSLDHCFS AGMRIKMRFE TEDAAERRYT GFITGISELD PVRWPGSKWR CLVVRWDDID 360 TSKHGRVSPW EVESSGSVSS SHTLMATGLK RSRIGLSATK PECPVPNGGI GTSDFGESLR 420 FQKVLQGQEI SGFDTPFSGL GGLNSHPSEA RRVFHGSGGS GIAAGGNGLR QSLVDSEIAS 480 KGIGFGESFR FHKVLQGQEI LPSSPYGRAP ASNEAHEYGG PGIYDGFQVP GFRNGWSTMM 540 QSNNTHVHSS APSVQVSSPS SVLMFQQAMN PVVEFNSVYN GHNQEDHRIN RTPHVSEHDG 600 GRQTSSSFGE RNFSREDRGG THFYNQHGIS PHPGTSQSTI SGSQDSVSPV KGSCRLFGFS 660 LSEEKCVPDQ EGNPNVGVQF HSKPPLMTST VGITSSGMFM SRIGLLTGAE KGWKAVYKDS 720 DHPVLVADDP RQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-110 | 18 | 381 | 7 | 361 | Auxin response factor 1 |
4ldy_B | 1e-110 | 18 | 381 | 7 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000415.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP283471 | 0.0 | KP283471.1 Prunus incisa isolate 462-2010A auxin response factor 3 (ARF3) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009344728.1 | 0.0 | PREDICTED: auxin response factor 3-like | ||||
Refseq | XP_018500456.1 | 0.0 | PREDICTED: auxin response factor 3-like | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A498K1C7 | 0.0 | A0A498K1C7_MALDO; Auxin response factor | ||||
STRING | XP_009344728.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4576 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |