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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pbr000412.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family |
NAC |
Protein Properties |
Length: 328aa MW: 36669.1 Da PI: 8.4794 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pbr000412.1 | genome | CPETR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 109 | 5.6e-34 | 55 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82
lp+G++F+Ptd+e++ ++L++kv +++ ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + +
Pbr000412.1 55 LPAGVKFDPTDQEIL-QHLEAKVLSDTrklhplID--EfipTLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHteedgsETR 148
799***********9.99****9999956644322..22222333336**********.666777788******************744446555778 PP
NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
W++tgk+++vl+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l
Pbr000412.1 149 WHKTGKTRPVLV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 195
************.9*************66589**************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MTWCNDSDDE RAIQIVSPPP PNNPNNPNEF RNITCPSCGH HIEFDQAGIH DLPGLPAGVK 60 FDPTDQEILQ HLEAKVLSDT RKLHPLIDEF IPTLEGENGI CYTHPEKLPG VNKDGQIRHF 120 FHRPSKAYTT GTRKRRKVHT EEDGSETRWH KTGKTRPVLV GGAVKGFKKI LVLYTNYGRQ 180 RKPEKTNWVM HQYHLGNNEE EKDGELVVSK VFYQTQPRQC GSSIKDVPTF DHHKGVNIRS 240 GQGNDGLISA AATNPLPLAK KAGLVEYYNP GGPFMNYDHH QHNHNQGGHN RESPPQLIPN 300 LVVQGDGSSF IRLTSDASKG KLERKIA*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF198119 | 0.0 | KF198119.1 Malus hupehensis NAC domain protein (NAC43) mRNA, complete cds. |