PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000180.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 724aa    MW: 79087.3 Da    PI: 5.5154
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000180.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.19.5e-1165106142
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLter 42 
                  r++ +++t+ q++e+e++F+ +++p+ ++r+eL+++lgL+  
  Pbr000180.1  65 RKRYHRHTQRQIQEMEAFFKDCPHPDDKQRKELSRELGLEPL 106
                  789999*********************************975 PP
2START215.61.7e-672404621206
                  HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  ela +a++el+++a+ ++p+Wv         e++n+de+l++f+++ +      ++ea+r+s +v+m++++lve+l+d++ qW++ +     +a+tl+
  Pbr000180.1 240 ELAVAAMEELIRMAQDGDPLWVPGDhnsiqkEILNEDEYLRTFPRGIGpkilgLKSEASRESELVIMNHVNLVEILMDVN-QWSTIFCgivsRAMTLD 336
                  57899*****************877788999**************999********************************.******99999****** PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                   +s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p    + R++++pSg+li++++ng+skvtwvehv++++
  Pbr000180.1 337 ILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQQVDGTWAVVDVSLDNLRPSP----ISRSRRRPSGCLIQELPNGYSKVTWVEHVEVDD 430
                  ***********************************************************99....69******************************* PP

                  SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                  r +h+++r+lv+sgla+gak+wvatl+rqce+
  Pbr000180.1 431 RAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 462
                  ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1047109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-1351107IPR009057Homeodomain-like
SMARTSM003893.1E-463117IPR001356Homeobox domain
CDDcd000866.19E-1064107No hitNo description
PfamPF000462.4E-865106IPR001356Homeobox domain
SuperFamilySSF559613.12E-34231464No hitNo description
PROSITE profilePS5084844.574231465IPR002913START domain
CDDcd088751.43E-126235461No hitNo description
SMARTSM002348.8E-68240462IPR002913START domain
PfamPF018521.3E-56241462IPR002913START domain
Gene3DG3DSA:3.30.530.202.9E-6345462IPR023393START-like domain
SuperFamilySSF559614.19E-26483714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MFQPSMFDNH HILDHMTTSS THKTSDSTGR LLEDDFETKS GTETTMDIPS GDEQDPNTTG  60
PRPKRKRYHR HTQRQIQEME AFFKDCPHPD DKQRKELSRE LGLEPLQAQH ERHENSILKS  120
ENDKLHAENN RYKEALGNAT CPNCGGPAAI GEMSFDEQHL RIENARLREE IDRISSIAAK  180
YVGKPLTSSF SSHVPSRSLD LAVGNFGTQP GFVGEMYGSS SDLLRTVSVP TEADKPMIVE  240
LAVAAMEELI RMAQDGDPLW VPGDHNSIQK EILNEDEYLR TFPRGIGPKI LGLKSEASRE  300
SELVIMNHVN LVEILMDVNQ WSTIFCGIVS RAMTLDILST GVAGNYNGAL QVMTAEFQVP  360
SPLVPTRENY FVRYCKQQVD GTWAVVDVSL DNLRPSPISR SRRRPSGCLI QELPNGYSKV  420
TWVEHVEVDD RAVHNIYRPL VNSGLAFGAK RWVATLDRQC ERLASSMASN ISAGELCVIT  480
STEGRKSMLK LAQRMVISFC TGVGASTAHA WTTLSATGSD DVRVMTRKSM DDPGRPPGIV  540
LSAATSFWIP VPPKRVFDFL RDENSRSEWD ILSNGGLVQE MAHIANGRDP GNCVSLLRVN  600
SANSSQSNML ILQESCTDST GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGA  660
AGSAGGGILD VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIKCTV ERIRAAVTCD  720
QNP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000180.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364098.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A498JWB00.0A0A498JWB0_MALDO; Uncharacterized protein
STRINGXP_009364098.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]