PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J682800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 783aa    MW: 85664.2 Da    PI: 6.8104
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J682800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-055981123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ Cgk F r  nL+ H r H
  Pavir.J682800.1.p 59 FVCEVCGKGFQRDQNLQLHRRGH 81
                       89******************988 PP
2zf-C2H214.40.00011138159223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         Cp Cgk++  + +Lk H + +
  Pavir.J682800.1.p 138 ACPRCGKRYAVQADLKAHAKIC 159
                        6*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-85881No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55981IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0145981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6355981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035585102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-5125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.12E-8132157No hitNo description
SMARTSM0035590137157IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663137165IPR007087Zinc finger, C2H2
PRINTSPR012171.2E-11196208No hitNo description
PRINTSPR012171.2E-11245266No hitNo description
PRINTSPR012171.2E-11267283No hitNo description
PRINTSPR012171.2E-11285302No hitNo description
PRINTSPR012171.2E-11303328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MTPTEPEPGP EQAAPEAALP LAAAAPAPVK KKRNLPGTPD PDAEVIALSP GTLLATNRFV  60
CEVCGKGFQR DQNLQLHRRG HNLPWRLRQR GPGAAPPRRR VYVCPEPGCV HHSPARALGD  120
LTGIKKHFCR KHGEKRWACP RCGKRYAVQA DLKAHAKICG TREYRCDCGT LFTRRDSFVT  180
HRAFCGALVE EAGRALAPPA PPSPRPPDLE AEENVDKDKE KGQEEEENED SALAEAEQPQ  240
RVEAPVPEAP QRHPSPPPLP QEPPPHPSSP PLPKEPLRRP SPPPLPKEPL RRPSPPPLPK  300
EPPHRPSPPP LPKEPLRRPS PPPLPKEPQL FPSPLPFPLE QRPVVAVVPN VDGPEVVAET  360
TVAAKLEDEA DQDEDTCFQE ADQFKEAELE VSNLLDKDTP MLPCFLPSPS EAIGTDGSST  420
TCGAGGSVSN SIAPSTTTNT FAGLFASATT STTSQSRSLR DLIGVDPTFL CLAIGAPSSL  480
FPQTSASNPG TFAAPPAPHM SATALLQKAA EVGASQSSSS FLKEFGLASS STSSPPLKQP  540
PQGRFTENSA LPWHHCSNQH MEMEHHRNHQ QREMESSSQP WHHRSTQQME MERHRNNQQR  600
EMESSSQRWH HHRSDQQMDM ERHRSNQQMQ MESSLQRWPH HRSNQQMEVS NQQMQMESST  660
QQWPHHRSSQ QMELMERHHW SSQQMEWESR AMLSGGLGLG LAYESGNSGL PDLMMGPSPL  720
FGPKPATLDF LGLGIGGTMD GSTANGGLPA LMVGGELAMG SSAQVPAPWE DAKRKTNGRT  780
IL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-29133194364Zinc finger protein JACKDAW
5b3h_F6e-29133194364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J682800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663580.0BT066358.1 Zea mays full-length cDNA clone ZM_BFc0009B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802400.10.0protein indeterminate-domain 1-like
TrEMBLA0A2T7EXX20.0A0A2T7EXX2_9POAL; Uncharacterized protein
STRINGPavir.J25784.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.17e-87C2H2 family protein