PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 264aa MW: 27654.8 Da PI: 7.8795

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J611200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed +l+ +vk +G g W+ ++++ g++R++k+c++rw++yl Pavir.J611200.1.p 14 RGAWTSQEDGILAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.7	2.1e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+v+++k+lG++ W++Ia++++ gRt++++k++w++ Pavir.J611200.1.p 67 RGNISDDEEDLIVRLHKLLGNR-WSLIAARLP-GRTDNEIKNYWNST 111 78999***************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-23	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.364	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.91E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.28E-8	16	61	No hit	No description
PROSITE profile	PS51294	24.769	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-23	65	115	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	8.89E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MGRRACCAKE GMKRGAWTSQ EDGILAAYVK AHGEGKWREV PQKAGLRRCG KSCRLRWLNY 60 LRPNIKRGNI SDDEEDLIVR LHKLLGNRWS LIAARLPGRT DNEIKNYWNS TLGRRVGAGG 120 SRAVAPAASG SCETGQKGAA APPRADPDSA GSAAAAAETA ASAAVWAPKA VRCRAGSLFF 180 HSDRDTPPAG ETPTTGAGAC AGGSGEGPDD CSSAASTFAA GVDGEPCFSS SGGGDWMDDV 240 RALASFLEND EEWVRCQVTE QLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-26	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J611200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY135018	1e-137	AY135018.1 Zea mays PL transcription factor (pl) mRNA, pl-bol3 allele, complete cds.
GenBank	AY135019	1e-137	AY135019.1 Zea mays PL transcription factor (pl) mRNA, pl-W22 allele, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812125.1	1e-141	anthocyanin regulatory C1 protein-like
Swissprot	P10290	1e-102	MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBL	A0A3L6PH97	1e-142	A0A3L6PH97_PANMI; C1-B73
STRING	GRMZM2G005066_P01	1e-111	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-56	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Pavir.J611200.1.p

Publications ? help Back to Top
Chen B,Wang X,Hu Y,Wang Y,Lin Z Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco. Mol. Biotechnol., 2004. 26(3): p. 187-92 [PMID:15004287] Paz-Ares J,Ghosal D,Saedler H Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J., 1990. 9(2): p. 315-21 [PMID:2303027] Cone KC,Burr FA,Burr B Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5 [PMID:3025847] Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J., 1987. 6(12): p. 3553-8 [PMID:3428265] Scheffler B, et al. Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene. Mol. Gen. Genet., 1994. 242(1): p. 40-8 [PMID:7904044] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701] Singer T,Gierl A,Peterson PA Three new dominant C1 suppressor alleles in Zea mays. Genet. Res., 1998. 71(2): p. 127-32 [PMID:9717435]