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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.J600500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 395aa MW: 42188 Da PI: 5.4191 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.J600500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 91 | 136 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+W++eEd l d+v++lG ++W++Iar ++ gR++k+c++rw +
Pavir.J600500.1.p 91 RGPWSPEEDAVLSDLVEKLGARNWTLIARGIP-GRSGKSCRLRWCNQ 136
89******************************.***********985 PP
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2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 143 | 187 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r+++T+eEd ++ a++ +G++ W+ Ia+ + gRt++ +k++w++
Pavir.J600500.1.p 143 RKPFTEEEDRIIMAAHAVHGNK-WACIAKLLD-GRTDNAIKNHWNST 187
789*******************.*********.***********986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MSAPETAASP APEPPSDPPA VSDAAHSNST PMAVETQTLT EPPPQPQSHQ ASPPPSGEDD 60 DVVVVSGASV GGDAAASAAS AGNATTEERV RGPWSPEEDA VLSDLVEKLG ARNWTLIARG 120 IPGRSGKSCR LRWCNQLDPQ VKRKPFTEEE DRIIMAAHAV HGNKWACIAK LLDGRTDNAI 180 KNHWNSTLRR RHCNDGGCKH GVSMERSIPE VSRAISEESW PLKDLSSFTA MDVRDAPVQT 240 VTETSPGAWL IPDQCYSTQP VDPPYLSRPV AKIGAFRPYN LGHVSEPTQQ ETPSSVFKPD 300 STLKALTPES EVFKFADPTC FAAGVPNKCG HGCSSAHKRT RTSLLGPEFN EFEDHPPILS 360 SSFASLVSEI SSIAWMRSGM QSDASSLLQS APPA*
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