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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.J595800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 216aa MW: 23177.4 Da PI: 11.6833 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.J595800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 65.3 | 1.1e-20 | 24 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+WT+eEd+ll +av+++G+++W+ I+++++ gR++k+c++rw +
Pavir.J595800.1.p 24 KGSWTPEEDDLLRRAVTRHGPRNWSVISAEIP-GRSGKSCRLRWCNQ 69
799*****************************.***********985 PP
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2 | Myb_DNA-binding | 61.3 | 2e-19 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r ++T+eEd l+v a++q+G++ W+tIar++ gRt++++k++w++
Pavir.J595800.1.p 76 RRAFTPEEDALIVAAHAQYGNK-WATIARMLH-GRTDNSVKNHWNST 120
678*******************.*********.***********986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MVVLPGGADG GGAPAGSGGP ARVKGSWTPE EDDLLRRAVT RHGPRNWSVI SAEIPGRSGK 60 SCRLRWCNQL SPGVERRAFT PEEDALIVAA HAQYGNKWAT IARMLHGRTD NSVKNHWNST 120 LRRHRRAAAA AANGGALPLR PLAAAAGPPP VPLRHLKLAD PRGVGAGLRR PPLDLKREED 180 DDEEDRGRGR NQRGLRASWR AQKRPCLGAP ALILL*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gv2_A | 2e-35 | 23 | 123 | 3 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-35 | 19 | 123 | 53 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-35 | 19 | 123 | 53 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-35 | 23 | 123 | 3 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-35 | 23 | 123 | 3 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727659 | 1e-125 | KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds. |