PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J573200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 436aa    MW: 46630.3 Da    PI: 7.9378
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J573200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.36.3e-19101392128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknratksgyWka 85 
                         +Gfr +Pt  e  ++yL + ++g +++++    i+++d+y +eP +L + ++   ++ + +fF++ + +++    + ++++ra+ +g W++
  Pavir.J573200.1.p  10 FRGFRLDPTPLEATTYYLPQLLAGAPMHEAIRpfIHHADVYACEPGELARLFRPlpKTGHRFFFTHCKLQQPhragKASKATRAAGAGSWHS 101
                        68************************76644235**************85333232555889999988877744445668889999****** PP

                NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +g +  v   k+ +vg  + L +     + g  tdW+m+ey+ 
  Pavir.J573200.1.p 102 QGVTDVVDL-KEVKVGEMRKLRYK----KGGAYTDWLMEEYSC 139
                        ***887777.9999*********8....456789*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-217157IPR003441NAC domain
PROSITE profilePS5100523.1979158IPR003441NAC domain
PfamPF023653.5E-1011138IPR003441NAC domain
PRINTSPR012175.9E-10176188No hitNo description
PRINTSPR012175.9E-10192208No hitNo description
PRINTSPR012175.9E-10245261No hitNo description
PRINTSPR012175.9E-10265282No hitNo description
PRINTSPR012175.9E-10290315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MALLGPEILF RGFRLDPTPL EATTYYLPQL LAGAPMHEAI RPFIHHADVY ACEPGELARL  60
FRPLPKTGHR FFFTHCKLQQ PHRAGKASKA TRAAGAGSWH SQGVTDVVDL KEVKVGEMRK  120
LRYKKGGAYT DWLMEEYSCS RAACRTPSQY VFCKFYVSPR AAPGSAARQE SAAFFAPPAP  180
APAPAVIAQV PPQPLKRPAP QVAEPPCPKR TRGAVVALNP PVVQPASGCT TYLAPPRPCV  240
PNSAVAPRST PSVIRSSPAP APTYLAAPPR RTPAPAPPQP VAQPSSASGA TAPPPTRLSA  300
PPRRTPAPAP PRPLGQPKQQ MPPPIPLVVR SCHMPVQAPA HHCGPQPSAH TKNTRDPFEA  360
AELRDEAEDD FDEDDLAKAL DEAVPTAEAE EEAPANSTMA DDEMEQHLLS LLGNDTVIVP  420
KEEIPDAIAY EGILA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J573200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827463.11e-134atherin-like
TrEMBLA0A3L6Q4760.0A0A3L6Q476_PANMI; Uncharacterized protein
STRINGPavir.J04858.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-13NAC 007