PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 348aa MW: 36393.8 Da PI: 6.3653

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J493200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.6e-09	163	210	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Pavir.J493200.1.p 163 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 210 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.94E-17	157	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.72E-10	157	214	No hit	No description
PROSITE profile	PS50888	15.123	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-17	159	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-6	163	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-9	165	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MDSDYVASLL MGHSAAPGLD FAALDGGLLD ALCGAGLFGA PGVAAGAGGG GSPEGSSVSD 60 PAWARATDSG NARKRKAPPA GSANGKEACL GKAGGPKAPD GKKGRVGAGG SPVKPKVEEA 120 TASDGSVEDK GQKKGKGKST KPPVEPPKDY VHVRARRGQA TDSHSLAERV RREKISQRMK 180 FLQDLVPGCN KVVGKALMLD EIINYVQSLQ QQVEFLSMKL ATVNPQLDFS NLSTLLHKDM 240 YQACGPSVNS VFPLESAGAA FPFCNQADLF QSFGSGAMED QCSLSLLDTA LPHTTNPQFA 300 FQKQQRDFWE DGLQNALPIV SEQSQENGVS APSFDGQLQA DQTKIEF*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MDSDYVASLL MGHSAAPGLD FAALDGGLLD ALCGAGLFGA PGVAAGAGGG GSPEGSSVSD  60
PAWARATDSG NARKRKAPPA GSANGKEACL GKAGGPKAPD GKKGRVGAGG SPVKPKVEEA  120
TASDGSVEDK GQKKGKGKST KPPVEPPKDY VHVRARRGQA TDSHSLAERV RREKISQRMK  180
FLQDLVPGCN KVVGKALMLD EIINYVQSLQ QQVEFLSMKL ATVNPQLDFS NLSTLLHKDM  240
YQACGPSVNS VFPLESAGAA FPFCNQADLF QSFGSGAMED QCSLSLLDTA LPHTTNPQFA  300
FQKQQRDFWE DGLQNALPIV SEQSQENGVS APSFDGQLQA DQTKIEF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4826	0.0	callus\| leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J493200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804696.1	0.0	transcription factor BHLH089-like
Swissprot	Q9CAA9	2e-54	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A3L6QSR4	0.0	A0A3L6QSR4_PANMI; Transcription factor bHLH49-like
STRING	Pavir.J32774.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	5e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.J493200.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]