PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J492700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 214aa    MW: 22402.8 Da    PI: 4.6191
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J492700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05129150223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +Cp Cgk F++  ++  H+r+H
  Pavir.J492700.1.p 129 ECPECGKFFKNDKSMFGHLRSH 150
                        6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.263128155IPR007087Zinc finger, C2H2
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSKGSLLWLC SLVLLQVCIA QLSLISGSQL TGGQIGGNLL CQDPIRRAWL MSRHGHDAFG  60
GHSADVISDE ELADEGVNTS DGEYTSDDRG MPVAVGEAGV EEEEGLLRSD GDDDGGGTKD  120
CSGSGGDVEC PECGKFFKND KSMFGHLRSH PNRGYKGATP PVRKLKLSPE TAAASSSSSS  180
RDNKQATQVP PPPPSSSFRK PDAIGQAEEL LIT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J492700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813526.16e-85uncharacterized protein LOC112890871
TrEMBLA0A2S3HJM78e-89A0A2S3HJM7_9POAL; Uncharacterized protein
STRINGPavir.Da01512.1.p1e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.15e-07C2H2-like zinc finger protein