PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J483000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 171aa MW: 19648.7 Da PI: 8.6691 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.4 | 6.3e-20 | 14 | 107 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 kfY++YA+e+ Fs r+ ++kk n+ei ++++ s++g+ +e+ ++ ++++ ++ +etr+gC+a+++vk+ +d+k+++ ++++eH+ Pavir.J483000.1.p 14 KFYKSYAHEADFSARVGQHKKG--NEEILIKRYYYSRKGFIKENITNgsdeseKKRKTHNVMETRCGCQAHIVVKLGSDQKYRIVSMVEEHS 103 6*****************9988..9999***************99999998666666668899***************************** PP FAR1 87 Hela 90 H ++ Pavir.J483000.1.p 104 HGFV 107 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.7E-18 | 14 | 107 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MVGMIFDTLK DVEKFYKSYA HEADFSARVG QHKKGNEEIL IKRYYYSRKG FIKENITNGS 60 DESEKKRKTH NVMETRCGCQ AHIVVKLGSD QKYRIVSMVE EHSHGFVSPD KRHLLISLHT 120 RHNCHGHFIL ITINLCYTAT CEAILVFNFN MPLQFKSFVQ GTVCVCELIT * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 69 | KRKTH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J483000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC121366 | 7e-95 | AC121366.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0111K12, complete sequence. | |||
GenBank | AC137618 | 7e-95 | AC137618.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0090H02, complete sequence. | |||
GenBank | AP014961 | 7e-95 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700007.1 | 4e-59 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2T8IBV3 | 3e-57 | A0A2T8IBV3_9POAL; Uncharacterized protein | ||||
STRING | Sb01g026910.1 | 5e-51 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15006 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-09 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J483000.1.p |