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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J475900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 453aa MW: 47447.1 Da PI: 7.3062 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.6 | 4.7e-40 | 210 | 286 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+egC+adls ak+yhrrhkvCe h+ka++v+++g++qrfCqqCsrfh l efD++krsCr+rL +hn+rrrk++ Pavir.J475900.1.p 210 RCQAEGCKADLSAAKHYHRRHKVCEYHAKAAAVAAAGKQQRFCQQCSRFHVLAEFDDAKRSCRKRLTEHNRRRRKPA 286 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-33 | 203 | 272 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.889 | 208 | 285 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.19E-37 | 209 | 286 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.0E-30 | 211 | 284 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MMSSSSSRMM MMSTNTMTGP TNDVDFSFGA MQAAAAQPYA GFDAAGAMAA MPSVERPPPL 60 LQHHHHNSHL YDSFDLAAAG FPFQEPGLLP PASLPLPPSM ELAAMPPSPL QMPLPGLLAA 120 AEVYPFGGAA AFLKREDGGH HHQLVDAGGG GTIGLNLGRR TYFSPADVLA VDRLLTRSRL 180 GGGGVGLGVG VLGLGLGDAH HHHHQQQPPR CQAEGCKADL SAAKHYHRRH KVCEYHAKAA 240 AVAAAGKQQR FCQQCSRFHV LAEFDDAKRS CRKRLTEHNR RRRKPAGAQG KDYSPPPKRA 300 ADTCIISTSY SSDHHKSASA TAAAKSTAIS PNGSGVSCLD AMDNGHITSS AAAAPTALSL 360 AALPPLHDEK DDGDDGGLGS MLMRQVQGRG GGDDDDRRRF MTSLVMQQQD HQHDGGGGGD 420 HDGAGGGNIL PCPSVSGHQN GGCNGFFEVD FI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-28 | 211 | 284 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 267 | 284 | KRSCRKRLTEHNRRRRKP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J475900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ011614 | 1e-141 | AJ011614.1 Zea mays mRNA for SBP-domain protein 1. | |||
GenBank | EU966891 | 1e-141 | EU966891.1 Zea mays clone 297975 SBP-domain protein 1 mRNA, complete cds. | |||
GenBank | KJ728009 | 1e-141 | KJ728009.1 Zea mays clone pUT6144 SBP transcription factor (SBP10) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798015.1 | 0.0 | squamosa promoter-binding-like protein 5 | ||||
Swissprot | Q0E3F8 | 1e-72 | SPL5_ORYSJ; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A2S3GLW2 | 1e-180 | A0A2S3GLW2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab00520.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2375 | 35 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-34 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J475900.1.p |