PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J422000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 492aa    MW: 51965.7 Da    PI: 9.9939
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J422000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-066486123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C++Cg+ F r  nL+ H r+H
  Pavir.J422000.1.p 64 YVCEICGQGFQRDQNLQMHRRRH 86
                       9*********************9 PP
2zf-C2H211.60.00083143164223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C  C+k +  +s++k H++t+
  Pavir.J422000.1.p 143 ACARCSKAYAVHSDYKAHLKTC 164
                        6*******************98 PP
3zf-C2H210.80.0016172190523
                        TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        dCg++Fsr +++  H+ t+
  Pavir.J422000.1.p 172 DCGRVFSRVESFIEHQDTC 190
                        9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.79E-56386No hitNo description
SMARTSM003550.00326486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355110106136IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.79E-5137162No hitNo description
SMARTSM00355230142169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MLGFCAPAAG SPPDDATPEP FRSLQIAATA AATTKKKRRP AGTPDPDAEV VSLSPRTLLE  60
SDRYVCEICG QGFQRDQNLQ MHRRRHKVPW KLLKREAGEA ARKRVFVCPE PSCLHHDPAH  120
ALGDLVGIKK HFRRKHSGHR QWACARCSKA YAVHSDYKAH LKTCGTRGHS CDCGRVFSRV  180
ESFIEHQDTC TAGRPRADAS PACGGGGVGV AAASAGSQRQ APPPALSLSR TASSTSPSSD  240
VVISPAAWPG PPPPLPSPTA AAFHGRFDRV PSPRTPPSEH HRGGRTHNLE LQLMPPSSSV  300
AGGGVPGTVA FCGAQSSPGG VSSRGDAAAA MQLQLSIGVC GGGSWDAGER GSEALDAAAR  360
ARQEEEARDL LRQAVAEKAA ADEARAQARR HAELAEQELA SAKRMRRQAQ VELSRAHALR  420
EHAVRQVNAT LLQITCLGCR HNSPAGPVGC RGHWPAAARP GRPRHPIPIP AQAAEGKQSL  480
RRCHAAAACL A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-16138192357Zinc finger protein JACKDAW
5b3h_F2e-16138192357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13438KKKRR
23439KKKRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.281863e-60root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J422000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067960.0AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBankAK1195950.0AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803598.10.0protein indeterminate-domain 16-like
TrEMBLA0A3L6QUU40.0A0A3L6QUU4_PANMI; Protein indeterminate-domain 16-like
STRINGPavir.J40191.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-102indeterminate(ID)-domain 14