 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.J404100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
Dof |
| Protein Properties |
Length: 435aa MW: 45311.9 Da PI: 7.9592 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.J404100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 125.8 | 1.4e-39 | 89 | 148 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++
Pavir.J404100.1.p 89 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKHA 148
68899*****************************************************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 435 aa
Download sequence Send
to blast |
MVVESAGGGG GDCLIKLFGK TIPVPEAAAD KESGSSISSC TESDTPENAS EPSPQPEVVD 60
AEDPKSSPET QPPPGAGDLA GQREKLKRPD KVLPCPRCNS MDTKFCYFNN YNVNQPRHFC 120
KNCQRYWTAG GAMRNVPVGA GRRKNKHAVA ASHFLHRVRA ALPAAAGDPL RANATVLSFG 180
GHGHGAPPAA LQDLAEQVTH LKEKLLVPAR NAGDPSPVGP CSEGPSSTDD KAHGGGIKEK 240
PAVDRPANGA PQLPASMNGA TVWPYGGCAP SPAAYFSSGI AIPIYPAAPG YWGCMVPAPG 300
PWSLPWSVQG LSLPTSAPSL PSSGPDPDLT LGKHPREGDE GRSAHGGGKV WAPKTIRIDD 360
ADEVARSSIW SLIGIKGDRK QDAADHHGAA GHKHGTVFEQ KREAKKQPAM IASSPLLHTN 420
PVALTRSVTF QEGS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KC582399 | 1e-106 | KC582399.1 Sorghum bicolor dof2 protein (dof2) gene, complete cds. |
