PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J404100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 435aa MW: 45311.9 Da PI: 7.9592

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J404100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	89	148	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Pavir.J404100.1.p 89 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKHA 148 68899*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	82	146	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-32	90	147	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	93	147	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	95	131	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MVVESAGGGG GDCLIKLFGK TIPVPEAAAD KESGSSISSC TESDTPENAS EPSPQPEVVD 60 AEDPKSSPET QPPPGAGDLA GQREKLKRPD KVLPCPRCNS MDTKFCYFNN YNVNQPRHFC 120 KNCQRYWTAG GAMRNVPVGA GRRKNKHAVA ASHFLHRVRA ALPAAAGDPL RANATVLSFG 180 GHGHGAPPAA LQDLAEQVTH LKEKLLVPAR NAGDPSPVGP CSEGPSSTDD KAHGGGIKEK 240 PAVDRPANGA PQLPASMNGA TVWPYGGCAP SPAAYFSSGI AIPIYPAAPG YWGCMVPAPG 300 PWSLPWSVQG LSLPTSAPSL PSSGPDPDLT LGKHPREGDE GRSAHGGGKV WAPKTIRIDD 360 ADEVARSSIW SLIGIKGDRK QDAADHHGAA GHKHGTVFEQ KREAKKQPAM IASSPLLHTN 420 PVALTRSVTF QEGS*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MVVESAGGGG GDCLIKLFGK TIPVPEAAAD KESGSSISSC TESDTPENAS EPSPQPEVVD  60
AEDPKSSPET QPPPGAGDLA GQREKLKRPD KVLPCPRCNS MDTKFCYFNN YNVNQPRHFC  120
KNCQRYWTAG GAMRNVPVGA GRRKNKHAVA ASHFLHRVRA ALPAAAGDPL RANATVLSFG  180
GHGHGAPPAA LQDLAEQVTH LKEKLLVPAR NAGDPSPVGP CSEGPSSTDD KAHGGGIKEK  240
PAVDRPANGA PQLPASMNGA TVWPYGGCAP SPAAYFSSGI AIPIYPAAPG YWGCMVPAPG  300
PWSLPWSVQG LSLPTSAPSL PSSGPDPDLT LGKHPREGDE GRSAHGGGKV WAPKTIRIDD  360
ADEVARSSIW SLIGIKGDRK QDAADHHGAA GHKHGTVFEQ KREAKKQPAM IASSPLLHTN  420
PVALTRSVTF QEGS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.12761	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J404100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582399	1e-106	KC582399.1 Sorghum bicolor dof2 protein (dof2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797411.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A3L6TIZ1	0.0	A0A3L6TIZ1_PANMI; Cyclic dof factor 1-like
STRING	Pavir.J12332.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-56	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pavir.J404100.1.p