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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.J391300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 198aa MW: 20880.8 Da PI: 11.3394 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.J391300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 73.3 | 4.1e-23 | 68 | 157 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+Wt++e+laLiea+r+++e+lr+g+l++++W++v++++ + +s +qC++k+e+l+kry++++ ++ +r+++ ++p+f l+
Pavir.J391300.1.p 68 CWTHEETLALIEAYRDRWEALRKGNLRAADWDDVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLLH 157
8*************************************998888788899*************************98443..47****9886 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MRRPCHHAPS GLRPSSPLPP SSRPHPSAAR REAAPVAAAA AAAAAAASSM GGMGLGAGAS 60 GRRLPPPCWT HEETLALIEA YRDRWEALRK GNLRAADWDD VANAVTARCG RFPTATPKSG 120 VQCRHKIEKL RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP 180 VPPASTPSPV SSPSSEEA
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