PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J390000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 267aa MW: 27923.2 Da PI: 8.0328

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J390000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	44.9	1.9e-14	101	167	2	67
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalpps 67 + lL+ecA avs g+l+ a+ +L +l ++asp++ + +Rl+ayft+A+aarl++s+ ++++ l+p Pavir.J390000.1.p 101 IALLMECAVAVSVGNLADANGMLLELGQMASPYAsSCGERLVAYFTKAMAARLMSSWVGICAPLAPP 167 689*****************************66779*******************9998654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	6.5E-12	101	167	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MQFHDPYIYS GNAVVGANLP LSSSSHSFLP HHQEFVHTGD RCPGKDVPEF VDQAAAEVSG 60 EQELAVNKEV SGRGGDGAVE EHQNGAATAR GEEEAHGVRM IALLMECAVA VSVGNLADAN 120 GMLLELGQMA SPYASSCGER LVAYFTKAMA ARLMSSWVGI CAPLAPPCAA VHAALTSRHA 180 SDGGGSSDVE APEAWTPTED HRGRARVRGA QSCAPAATSR TRPPRFTEGP AQWRGGAGRR 240 RRRGGARCTC GGGGVRARRQ RQARPA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J390000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726962	1e-126	KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806715.1	9e-97	protein SCARECROW-like
TrEMBL	A0A3L6RDI5	1e-101	A0A3L6RDI5_PANMI; Protein scarecrow-like
STRING	Si021890m	3e-92	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13813	25	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	8e-13	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.J390000.1.p