|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.J345100.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 309aa MW: 33250.2 Da PI: 6.5144 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.J345100.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 22 | 3.8e-07 | 38 | 82 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
g+WT eE +l+ +a ++ + +W+++a+ ++ gR +++ ++
Pavir.J345100.1.p 38 GAWTLEENKLFERALARVDWDapdRWERVAALLP-GRMVSDVVAHY 82
79****************99999***********.********999 PP
|
2 | Myb_DNA-binding | 45 | 2.5e-14 | 155 | 199 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
Pavir.J345100.1.p 155 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 199
7*******************************************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MTESWMDVLP PAPAPPYYAG QAGGRFLPDR RASAPGPGAW TLEENKLFER ALARVDWDAP 60 DRWERVAALL PGRMVSDVVA HYDDLENDVC FIEAGLVPFP HYGGAAGSAA GFTFDWDGGD 120 ADAAAAGLGS FKRSCYMAGA RRGRGPDQER KKGIPWTEEE HKLFLMGLKK YGRGDWRNIS 180 RNFVTSRTPT QVASHAQKYF IRLNSGGKDK RRSSIHDITT VNLPDEDGGG GNPSPSPPSA 240 LTAASTPSST GGPVISEQFG VLVDSKPAPT HHFVPHPYGN VKLEPSNSGF LDDSVLMQMQ 300 CGQLQPLG*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |