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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.J328400.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 293aa MW: 32276.3 Da PI: 8.087 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.J328400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 33.2 | 1.2e-10 | 39 | 85 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
WT+eE +l+ +a ++ + +W+++a++++ ++t +++++++++
Pavir.J328400.1.p 39 EWTAEENKLFEEALARVDRNapdRWEKVAAMLP-RKTVVDVVNHYNDL 85
7*****************99*************.***********986 PP
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2 | Myb_DNA-binding | 50.3 | 5.4e-16 | 144 | 188 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+eE+ l++ + k++G+g+W+tI+r+ ++Rt+ q+ s+ qky
Pavir.J328400.1.p 144 PWTEEEHRLFLMGLKKYGKGDWRTISRKYVTTRTPTQVASHAQKY 188
8*******************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MMAEAWAQVL LPPTAPFFSG QPSCLWQDRH AGFGGRWDEW TAEENKLFEE ALARVDRNAP 60 DRWEKVAAML PRKTVVDVVN HYNDLENDVG YIEAGLVPFP RYSGSPPSSG FTLEDWDGGD 120 GVFRRGYCLK RARGPDQERK KGVPWTEEEH RLFLMGLKKY GKGDWRTISR KYVTTRTPTQ 180 VASHAQKYFI RLNSGGKDKR RSSIHDITTV NLPDEDRGNG SPSPSPPSAA TNPSAAGQFG 240 ALVDVKPFAP PLGVAHAHPY GNVKLEPKGA LVGGLGFDDS VLLRMQCEAG QL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HF679444 | 1e-180 | HF679444.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB38 protein. |