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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.J298200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
LBD |
| Protein Properties |
Length: 291aa MW: 32438.4 Da PI: 12.6351 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.J298200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 91.5 | 9.9e-29 | 17 | 101 | 15 | 99 |
DUF260 15 dCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
dC+lapyfpa+q+++f n+h+lFG+sn+lk+lk+l++e dam +l+y++++ra+dPv G++++il+l++qle + ael ++ +
Pavir.J298200.1.p 17 DCPLAPYFPADQQRRFLNAHRLFGVSNILKTLKRLRPELCADAMGTLIYQSDMRAQDPVGGCYRLILTLERQLELEMAELTAVLH 101
8******************************************************************************988765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MRRVQVPAAQ VQPGVLDCPL APYFPADQQR RFLNAHRLFG VSNILKTLKR LRPELCADAM 60
GTLIYQSDMR AQDPVGGCYR LILTLERQLE LEMAELTAVL HHLALCRQAA AAATAIPPPQ 120
EGGMAADGRP RRHLLQPAAA PPQRQAGGRR RALRQPRTRR RHPSNRPRPP PRSRRRQPAR 180
SWRRAAAAAA ALRLLLLRSH RQRRRQQQAG HRHKPRQHAA IRLRRHLRRR EGGPVHGGAG 240
GDRAAAAPPP RRQLPDRPQG LRDQGGGAHR RVRHAAGAAG PAGGRERRRR *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5ly0_A | 1e-15 | 18 | 117 | 26 | 123 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 1e-15 | 18 | 117 | 26 | 123 | LOB family transfactor Ramosa2.1 |
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 147 | 154 | GRRRALRQ |
